Corylus avellana (European hazelnut): 132177457
Help
Entry
132177457 CDS
T09426
Name
(RefSeq) DNA repair protein RAD50 isoform X1
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
cave
Corylus avellana (European hazelnut)
Pathway
cave03440
Homologous recombination
cave03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cave00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
132177457
03450 Non-homologous end-joining
132177457
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cave03032
]
132177457
03400 DNA repair and recombination proteins [BR:
cave03400
]
132177457
DNA replication proteins [BR:
cave03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
132177457
DNA repair and recombination proteins [BR:
cave03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
132177457
BRCA1-C complex
132177457
NHEJ (non-homologous end-joining)
MRX complex
132177457
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SMC_N
Rad50_zn_hook
SbcC_Walker_B
CCDC92
AAA_15
AAA_21
Motif
Other DBs
NCBI-GeneID:
132177457
NCBI-ProteinID:
XP_059445774
LinkDB
All DBs
Position
ca4:28895901..28914082
Genome browser
AA seq
1345 aa
AA seq
DB search
MSTVDKMLIKGIRSFDPENKNVITFFKPLTLIVGPNGAGKTVIYFSTPHTPSCIFIIFPV
CFKCLDLIMQTIIECLKLSCTGELPPNARSGHSFIHDPKVAGETETKGQIKLRFKTAVGK
DVVCIRSFQLTQKASKMEYKAIESVLQTINPHTGEKVCLSYRCADMDREIPALMGVSKAI
LENVVFVHQDEANWPLQDPSTLKKKFDDIFSATRYTKALEVIKKLHKDQAQEIKTYKLKL
ENLQTLKDAAYKLRESIAQDQEKTESLNIQMQELGESIQNVDAKIHHSEITLKDLRKLQD
LISTKTAERSTLFKEQQKQYAALAEENEDTDEELKEWKTKFEERIALLESKISKLEREMN
DTETKSSFLKRTINESIWEISKLQTEAEAHMSLKNERDFTIQKLFARHNLGSLPNTPFSD
EGALSLINRIKSRLMDLEKDMEDKKKSNEYELKTAWDCYMDANDRWKNIEAQKQAKLEIK
SGILKRIEEKENERDSFELQISNVNLSHIDEREKNMRIEVERKTNQLAEREFESNIRQKQ
SELYSIEQKIKAVNREKDVMAADSEDRVKLSLKKAELENHKKKHKKIVDEYKDRIRGVLK
GRLPPDKDLKKEITQAQRAIGMEFDDLNTKSREAEKEVNMLQIKIQEVNTNLSKCGKDVE
SRKRFIESKLQSLDQQSLSIDFYVKVLESAKEKKDVQKSKYNIADGMRQMFDPFERVARA
HHVCPCCERPFSAEEEDEFVKKQRVKAASSAEHMKVLAVESSNAESFFQQLDKLRMVYEE
YLKIGKETIPNAEKDLHELTEELDEKTQALDDVLGVLAQVKADKDSVEALVQPVETADRL
FQEIQSWQKQVDDLEYKLDFRGQGVRTMEEIQLELNTLQSTKDGLHNELEKLRDEQRYME
NDLSNIQIRWHTLREEKVKAANTLRDVKKAEEELERLTEEKSQVDLDEKHLGEALGPLSK
EKDKLLRDYNELKAKLNCEYEERAEQKRNYQQEVESLLKISFRVKEYYDLKKGDRLKEMQ
EKQSLSESQLQSCDIRKQEILAELNKSKDLMRNQDQLRRNIEDNLNYRKTKAEVDELARE
IESLEERILKVGGVSTFAAELGKLSQERERLLSELNRYHGTVAVYQSNVSKNKIDLKQAQ
YKDIDNRYFDQLIQLKTTEMANKDLDRYYNALDKALMRFHSMKMEEINKIIRELWQQTYR
GQDIDYISIHSDSEGAGTRSYSYRVVMQTGDAELEMRGRCSAGQKVLASLIIRLALAETF
CLNCGILALDEPTTNLDGPNAESLAAALLRIMEDRKGQENFQLIVITHDERFAQLIGQRQ
HAEKYYRVTKDDHQHSIIEAQEIFD
NT seq
4038 nt
NT seq
+upstream
nt +downstream
nt
atgagcaccgtcgataagatgttgatcaaaggcatccggagcttcgacccggagaacaag
aacgtcatcaccttcttcaagccattaaccctaatcgtcggccccaatggagctggcaaa
accgtaatttacttctcaacccctcacactccttcatgtatatttatcatctttccggta
tgttttaagtgtttggatttgatcatgcagaccatcatagagtgcttgaagctctcgtgc
accggagagctgcctcccaatgcgaggtccggccacagtttcattcacgaccccaaggtt
gcaggggaaacagagacaaaagggcaaattaagcttcgattcaagacagcggtgggtaag
gatgtggtgtgcattaggtcgtttcagctgacgcagaaggcgtcgaagatggagtataag
gcaattgagagcgtgcttcaaacaataaaccctcacactggtgagaaagtttgccttagc
tatagatgtgctgacatggatcgagagatccctgctttaatgggtgtttcaaaggctatt
ctggaaaacgtggtatttgtacaccaagatgaagctaattggccattgcaagatccttcc
acattaaaaaagaaatttgacgatatcttctctgcaacccgatacacaaaggcattggag
gttataaaaaaacttcacaaggatcaggctcaagaaataaagacctacaagctgaaattg
gagaatcttcaaactttgaaagatgctgcatataagcttcgggaaagcattgctcaagat
caagagaaaacagaatctctgaacatacaaatgcaggaattgggggaaagcatccaaaat
gtggatgctaaaattcatcattctgaaataacgctgaaagatttgcggaaactacaggac
ctgatatcaacaaagactgcggaaagaagcacattgtttaaggagcagcagaaacagtat
gctgctcttgctgaggagaatgaagacactgatgaagagttgaaggaatggaaaaccaag
tttgaagaaaggattgcacttttggaatctaaaataagcaagttagagagggaaatgaat
gacacagagactaaaagttcttttcttaagaggacaattaatgaatctatctgggagatt
agcaagctacaaactgaagctgaagctcatatgtccttgaagaatgaacgagatttcacc
attcaaaaactttttgcaaggcataatctagggtctcttccaaatacccccttcagtgat
gaaggtgctttgagcctcataaatcgaatcaaatctaggttgatggatcttgagaaggat
atggaggataaaaagaaatcaaatgaatatgaacttaagacagcatgggactgctatatg
gatgcaaatgaccgatggaaaaatattgaggcgcaaaaacaggccaaattagagatcaag
agtggcattttgaaacgcatagaagagaaggaaaatgagcgtgattcattcgaacttcaa
atttctaatgttaatctttctcacattgacgaaagagaaaaaaacatgcgtattgaggtt
gagagaaaaacgaatcagcttgctgaaagagaatttgaatcaaacatacgtcaaaagcag
agtgagctatatagcatagaacaaaagataaaggctgttaatcgagagaaagacgttatg
gctgctgattctgaggacagagtgaaactgtctctgaagaaggcagagttggagaatcac
aagaagaaacacaaaaagatagttgatgagtacaaggacagaattagaggagtgctgaaa
gggaggcttccacccgacaaagatttgaaaaaggaaattactcaggcccaaagggccatt
ggaatggagtttgatgacttgaatacaaaatcccgtgaagctgagaaggaggtgaatatg
ttgcagattaaaatacaagaagttaatactaatctgtccaaatgtggcaaggatgtggag
tcaaggaagagatttattgaatccaaacttcagtccttggatcagcaatctcttagcata
gatttttacgtcaaagtcttggagtcagctaaggagaaaaaagatgtccagaaaagcaaa
tacaacattgcagatggtatgcggcaaatgtttgatccttttgaaagggttgcccgtgct
catcacgtttgcccttgctgtgagcgccctttctctgcggaagaggaagatgagtttgtt
aaaaagcaaagagtgaaggcagcaagttccgctgagcatatgaaagtgttggctgtggag
tcctcaaatgctgaatctttttttcagcagttagacaagcttcgtatggtttatgaagaa
tatcttaaaattggaaaggaaacaattcctaatgctgagaaagatttgcatgagctgacc
gaagagctggatgaaaagactcaggcccttgatgatgtgttaggtgttttagctcaagta
aaggctgataaggactcagttgaggccttggtgcagcctgttgaaactgctgacaggctc
ttccaagaaattcaaagttggcaaaagcaagttgatgatttagagtataagcttgatttt
cgagggcaaggcgtgagaaccatggaagaaattcagttagagctgaatacattgcaaagc
acaaaggatggtttgcataatgaactggagaagttaagggatgagcagaggtatatggaa
aatgatttatccaacattcaaattcggtggcacactctaagggaggagaaagtcaaagca
gctaatacattgcgtgatgttaaaaaggcagaagaagagttagagcgtttaaccgaggaa
aaaagtcaagttgatcttgacgagaagcatttgggggaggctcttggccctttatcgaag
gagaaagataaattactgcgtgactacaatgaattgaaagctaaacttaattgtgaatat
gaggagcgggctgaacaaaaaagaaattaccagcaggaagtcgagagtctacttaaaatt
tcttttagagttaaagagtattatgatttaaagaaaggagacaggttgaaagaaatgcaa
gaaaagcaatctctatcagaatctcaacttcaaagttgcgacattaggaagcaggaaatt
ttagctgaattaaacaaaagtaaagacttgatgaggaatcaagatcagttaagacgaaat
attgaggacaacttgaattataggaaaacaaaggctgaagtagatgagcttgcccgtgag
attgaatcactggaagaaagaatattgaaggtcggtggggtttcaacatttgcagctgaa
cttggaaagctctcacaggaaagagagagacttctttcagagttaaacaggtaccatgga
acagtggctgtctaccaaagtaacgtttcgaaaaacaaaattgatcttaaacaggcacaa
tacaaggatattgacaatcggtactttgatcagctaatccagcttaagacaactgagatg
gcaaacaaggacctggacagatactacaatgcacttgacaaagcacttatgcgattccac
tcaatgaaaatggaagaaattaataaaataataagagagttgtggcaacaaacatacaga
gggcaagacatagattacattagtatccattctgattctgaaggtgctgggactcgctcc
tacagctacagggttgtcatgcagactggtgatgcagagttagaaatgaggggaaggtgt
agtgctgggcagaaggtccttgcttccttgatcatacggttggctttagccgagactttc
tgcctcaactgtggtatattagcactagatgaaccaaccaccaacttggatggcccaaat
gccgagagtcttgccgcagctcttctgagaattatggaggacagaaagggccaggaaaat
tttcagctgatagtgattactcatgatgagcgttttgcccaattaattggtcagcggcag
cacgcagaaaaatattatcgcgtcacaaaggacgaccatcagcacagtataattgaagcc
caggagatatttgattga
DBGET
integrated database retrieval system
