Corylus avellana (European hazelnut): 132177525
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Entry
132177525 CDS
T09426
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7-like
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
cave
Corylus avellana (European hazelnut)
Pathway
cave03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cave00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132177525
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cave03041
]
132177525
Enzymes [BR:
cave01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
132177525
Spliceosome [BR:
cave03041
]
Complex C
Other components
Step II factors
132177525
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
AAA_22
HA2_N
AAA_19
SLFN-g3_helicase
AAA_30
Flavi_DEAD
AAA_24
nSTAND3
T2SSE
AAA_16
ABC_tran
Sigma54_activ_2
ATPase
AAA_7
PhoH
Motif
Other DBs
NCBI-GeneID:
132177525
NCBI-ProteinID:
XP_059445872
LinkDB
All DBs
Position
ca4:35455680..35466513
Genome browser
AA seq
1288 aa
AA seq
DB search
METRGGDAGILDVDKITETLEPEKASSGGLYVPGKDRLVFRPPERKSVLGLDVLAIAKRA
ESKVDGGFKAPRERVASMVASLEEEENSESSGLDEVGSNANSGTRNNVSRRYRESAASET
GSAVTQEEQVNDTPRTHRSSEHSFSDVPNTPTRSHQNIRSWSPRYERDDRDRERRDYKDD
TRSERRVGHRHSSDRENYHRREARDRHDQDYDGEYRSKRSRYEGSRGTPGRSDWDDGRWE
WEDTPRRRDSHSHTSRRHQPSPSPMLVGASPDARLVSPWLGGHTPLSSGSASSPWDHVSP
SPIPIRPSGSSVRSSSSRHGGRSHQLNFSAENSEAFEDGGADKSDFSEEHKYEITESMRL
EMEYNSDRAWYDREEGNTLFDADTSSFYLGDEASFQKKEAELAKRLLRRDGTKMTLAQSK
KMSQLTADNAQWEDRQLLRSGAVKGTEVQTEFDDEDERKVILLVHDTKPPFLDGRVVFTK
QAEPIMPIKDPTSDMAIISRKGSALVREIHEKQSMNKSRQRFWELAGSKLGDILGVEKTA
EQIDADTAVVGEDGEIDFKEDAKFAQHLKKGEAVSDFAKSKTLAQQRQYLPIYSVRDELL
QVIRENQVVVVVGETGSGKTTQLTQYLHEDGYTTNGVVGCTQPRRVAAMSVAKRVSEEME
TELGDKVGYAIRFEDVTGPKTVIKYMTDGVLLRETLKDSDLEKYRVVVMDEAHERSLSTD
VLFGILKKVVAQRRDFKLIVTSATLNAQKFSNFFGSVPIFHIPGRTFPVNTLYSKTPCED
YVEGAVKQAMTIHITSPPGDILIFMTGQDEIEAACYALAERVEQLISSTKKAVPKLLILP
IYSQLPADLQAKIFQKAEDGARKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPRMGM
DALQVFPVSRAAADQRAGRAGRTGPGTCYRLYTDSAYLHEMLPSPVPEIQRTNLGNVVLL
LKSLKVENLLDFDFMDPPPQDNILNSMYQLWVLGALNNVGGLTGLGWKMVEFPLDPPLAK
MLLMGEELGCLDEVLTIVSMLSVPSVFFRPKDRAEESDAARERFFVPESDHLTLYNVYTQ
WKQHQYRGDWCNDNFLHVKGLRKAREVRSQLLDILKTLKIPLTSCWPNSDIVRKAICSAY
FHNAARLKGVGEYVNCRNGMPCHLHPSSALYGMGCTPDYVVYHELILTTKEYMQCATAVE
PQWLAELGPMFFSVKESDTSMLEHKKRQKEEKTAMEEEMENLRKVQAEAERESKKKDRER
RAKQQQEVCTPGLRQGSTTYLRPKKFGL
NT seq
3867 nt
NT seq
+upstream
nt +downstream
nt
atggagacccgtggaggtgatgctggaattttagacgtggacaagataacagagacattg
gaacctgagaaggcaagcagtggaggattgtatgttcctgggaaggatagattggtgttt
agacctcctgaaaggaaatcggtcttagggctagatgtccttgctattgcaaaacgagcg
gagtctaaggttgatggtggattcaaggccccaagagaaagagttgcttctatggtggcg
tctttagaggaagaggagaattcggaatcctctgggttagatgaagtaggaagtaatgca
aatagtggcacacgcaataatgttagtaggcgatatcgtgaatcggctgcaagcgagaca
ggaagtgctgtgacacaagaagaacaagttaatgatacacctcggactcatcgatctagt
gaacattcgttttcagatgttccaaatacaccgacaagaagtcaccagaatattcgatct
tggagtcctaggtatgaaagggatgaccgagaccgtgaaagaagagattacaaggatgac
acaagaagtgaaagaagggtgggacatagacacagttctgacagagagaattatcacaga
agggaagcacgcgatcgacatgatcaagactatgatggagaatatagaagcaagcgaagt
agatatgaaggttcaaggggtacacctggtagatctgactgggatgatggaagatgggaa
tgggaagatacaccacgccgccgggatagtcactctcataccagtaggcgccatcaacct
tcaccatccccaatgttagttggggcatcaccggatgcacgactagtttccccatggttg
ggtggccacacacctctttcttctggttctgccagttctccctgggaccatgtctctccc
tctccaattccaatacgtccttctggatcctctgtgagatcctcgagttctagacatggt
gggaggtcccatcaacttaatttttctgcggaaaattcagaagcatttgaggatggaggt
gctgataagtctgatttctctgaagagcacaagtacgagattacagaaagtatgcgtctc
gagatggaatataattctgaccgtgcatggtatgacagagaagaaggtaacacattgttc
gatgcagatacctcgtcgttttatctgggagatgaggcttctttccagaagaaagaagca
gaattggccaaaagactgcttcggagagatggaaccaagatgacacttgctcagagcaaa
aagatgtcccagctcactgccgataatgctcagtgggaagaccggcaactattgagatct
ggagctgttaaagggactgaggtgcagacagagtttgatgatgaggatgaacgcaaggtt
attcttcttgtacatgatacaaaacctcctttcctagatgggagagttgtttttaccaaa
caagcagagccaataatgccaataaaagacccaacatcagatatggcaataatttcgcgc
aaaggatcggctctggttagagaaattcatgagaaacaaagtatgaacaagtcacgccaa
cgtttttgggagctcgcaggctcgaaacttggtgacattcttggtgttgaaaaaacagcg
gaacagattgatgccgacactgctgtagtaggcgaagatggtgaaattgattttaaggag
gatgcaaagtttgcacagcatttaaagaagggggaagcagtaagtgattttgcaaagtca
aaaaccttagcgcagcaacgtcagtatctgccaatctattctgtgagggatgagttattg
caggtaattcgcgaaaatcaggtggtggtggttgtcggagaaactggttcaggaaagacg
actcaactgacacagtatctgcatgaggacggctacactacaaatggtgtagttggttgc
acccaaccaagacgtgttgcagctatgagtgttgcaaaaagagttagtgaagagatggag
acggagctgggtgacaaagttggttatgctatacgttttgaggatgtgaccgggccaaaa
accgtaattaagtatatgactgatggagtactcttgcgagaaacactcaaagattctgat
ctagaaaagtatcgtgtcgttgtgatggatgaagcccatgagaggtcactaagcacagat
gtgctgtttgggatattgaaaaaagtggttgctcagcgacgtgatttcaagcttatagtg
acgtctgcaactctgaatgcgcaaaaattttcaaatttctttggaagtgtaccaattttc
cacatccctggcagaacatttcctgttaataccctgtacagtaaaaccccatgtgaagat
tacgttgaaggtgcagtgaagcaggctatgactatccatatcaccagccctcctggtgac
atcctcatcttcatgactggccaagatgagattgaggcagcctgttatgcccttgcagag
cgtgtggaacagctcatatcatccacgaagaaagcagttccaaaactcctgatactccct
atatattcacagctgcctgctgacttgcaagcaaagatattccagaaagctgaagatggg
gctcgtaaatgcattgtggcaaccaacattgctgagacatctttgactgtagatggaatt
ttttatgtcattgacacggggtatggtaagatgaaagtatacaaccctaggatgggtatg
gatgctctccaagtattccctgtcagccgtgctgctgctgaccaacgtgctggacgtgct
ggtagaactgggcctgggacatgttatcgcctgtatacagatagtgcatacctacacgaa
atgctgccaagtcctgtgcctgagatccaaaggacgaacctcggcaatgtagttttgtta
ctcaaatctctcaaagttgagaacttgctggattttgatttcatggacccacctccgcag
gataatattcttaattctatgtaccagttgtgggtcttaggtgctcttaacaatgtggga
ggcttaactggtcttggctggaaaatggtggagtttccgttggaccccccacttgccaag
atgcttttgatgggtgaagagctaggatgcttagatgaggtgttgacaattgtttcaatg
ctctcagtgccgtcggtattcttccggcctaaagatagggcagaggagagtgatgctgcg
cgtgaaagattttttgtgccggaatctgaccacttaacgctatataatgtttacactcaa
tggaaacaacatcaatatcggggagactggtgtaatgacaattttttgcatgtgaaaggg
ttacgaaaggctagagaagtgagatcccagctgctggatattctcaagacactgaaaatc
cctttgacatcttgttggcctaattcagatatcgtgagaaaagccatttgttctgcatac
ttccataatgcagcaagattaaagggtgtgggtgagtatgtgaattgcaggaatgggatg
ccttgccatttgcatccgagcagtgctctctatggtatgggttgcactccagattatgtg
gtttatcatgagctgattttgacaacaaaggagtatatgcaatgtgcgacagcagtggaa
cctcagtggctggctgagctgggaccaatgttcttttctgttaaggagtcggacacatcg
atgttggagcataagaagagacagaaggaagagaaaacggccatggaggaggaaatggag
aatttgaggaaggtgcaagcagaagcagagcgagaaagcaagaagaaggacagggaaagg
agggcaaagcagcagcaagaagtctgcacgccaggtctgcggcagggctctacaacctat
ttgagaccaaagaagtttggtttgtaa
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integrated database retrieval system
