Corylus avellana (European hazelnut): 132177580
Help
Entry
132177580 CDS
T09426
Name
(RefSeq) eukaryotic initiation factor 4A-3
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
cave
Corylus avellana (European hazelnut)
Pathway
cave03013
Nucleocytoplasmic transport
cave03015
mRNA surveillance pathway
cave03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cave00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132177580
09122 Translation
03013 Nucleocytoplasmic transport
132177580
03015 mRNA surveillance pathway
132177580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cave03019
]
132177580
03041 Spliceosome [BR:
cave03041
]
132177580
03009 Ribosome biogenesis [BR:
cave03009
]
132177580
03012 Translation factors [BR:
cave03012
]
132177580
Enzymes [BR:
cave01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
132177580
Messenger RNA biogenesis [BR:
cave03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
132177580
mRNA cycle factors
Stress granule specific factors
132177580
Spliceosome [BR:
cave03041
]
Complex C
Other components
EJC/TREX
132177580
Ribosome biogenesis [BR:
cave03009
]
Eukaryotic type
90S particles
Helicases
132177580
Translation factors [BR:
cave03012
]
Eukaryotic type
Initiation factors
eIF-4
132177580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
AAA_30
AAA_22
Utp25_C
Motif
Other DBs
NCBI-GeneID:
132177580
NCBI-ProteinID:
XP_059445938
LinkDB
All DBs
Position
ca4:complement(9580885..9587674)
Genome browser
AA seq
409 aa
AA seq
DB search
MADVGGTSVVRPNARRVSAPEEALEFETSREVQVVTSFDQMGIKDDLLRGIYNYGFEKPS
AIQQRAVVPILIGRDVIAQAQSGTGKTSMIALTVCQKVDTATREVQALILSPTRELASQT
EKVILAIGNYINIQVHACIGGKSMSEDIRKLEHGVHVVSGTPGRVCDMIKRRTLRTRHIK
ILVLDESDEMLSRGFKDQIYDLYRYLPPELQVVLISATLPHEILEMTNKFMTDPIRILVK
RDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRTNNF
TVSSMHGDMPQKERDAIMAEFRSGQTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYI
HRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI
NT seq
1230 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgttggcggaaccagcgtggtgcggccgaacgctcggcgagtgagcgcgccg
gaggaggcgctggagttcgagacgtcgcgggaggtgcaggtggtgaccagcttcgaccag
atgggcatcaaggacgacctgctccgcggcatctacaactacggcttcgagaagccctcg
gcgattcagcagcgtgccgtggtgcccatactcatcggccgagatgttatcgcccaggcc
cagtccggcacgggcaagacctccatgattgccctcaccgtttgccagaaggtcgatact
gccaccagagaagttcaggcgttgatcctgtcaccaacaagggaattggcatctcagaca
gaaaaggtgattttggcaattggtaattacataaatattcaagtacatgcatgcatcgga
ggcaagagcatgagtgaagatatcagaaagttagaacatggagttcatgtggtgtccgga
actccaggcagagtctgtgacatgatcaagaggagaacactgcgtacgagacatatcaaa
atactagttcttgatgaatctgatgagatgttgagcagagggttcaaggatcagatttat
gatctgtacagatatctcccaccagaacttcaggttgtcttgatttctgctacacttcct
catgaaattttggagatgacaaacaagtttatgactgatcctatacggatacttgtgaaa
cgtgatgagttgactctggagggcatcaagcaattttttgttgcagttgaaagggaagag
tggaagtttgatactctatgtgatctttatgacaccctcacgattacccaagctgttata
ttctgcaacacgaagcgaaaggtggattggctaactgaaaagatgcgtaccaataacttt
actgtttcatcaatgcatggagacatgcctcaaaaggagagagatgcaattatggccgag
tttcgatctggtcaaaccagagtcctgataacgacagatgtttgggcacgggggcttgat
gttcaacaggtttcccttgtgatcaattacgaccttccaaacaatcgtgagctttacatt
catcggattggtcgttctggtcgttttggaagaaagggtgttgcaataaactttgtgaaa
agtgacgacattaaaatcctaagagacatagagcagtactacagtactcagattgacgag
atgccaatgaatgttgctgatctgatataa
DBGET
integrated database retrieval system
