Corylus avellana (European hazelnut): 132178929
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Entry
132178929 CDS
T09426
Name
(RefSeq) probable RNA helicase SDE3
KO
K18422
helicase MOV-10 [EC:
5.6.2.5
]
Organism
cave
Corylus avellana (European hazelnut)
Brite
KEGG Orthology (KO) [BR:
cave00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cave03019
]
132178929
03036 Chromosome and associated proteins [BR:
cave03036
]
132178929
Enzymes [BR:
cave01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
132178929
Messenger RNA biogenesis [BR:
cave03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
132178929
Chromosome and associated proteins [BR:
cave03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Other miRNA pathway proteins
132178929
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MOV-10_beta-barrel
Motif
Other DBs
NCBI-GeneID:
132178929
NCBI-ProteinID:
XP_059447499
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All DBs
Position
ca4:complement(30303479..30308766)
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AA seq
680 aa
AA seq
DB search
MDDVNPLLKFLQCILCCHVERHDDNDDLTCCIKPFREYFRANSRNRNPEYEYLPVDTTPP
SSPRPRVTLSAPFCQPIVGDSPTFSYRPSQSSYKPPQSSYSPSPSSSKSATSSSEPSPAF
PNALLSSSKPSQSISKPNLPPSSFSPSASSPTYSKPPQSSPSLAPSSANPLPSAPKPASS
HKPSLSSPKELPYSSGPSPFPHNGPPSSSRPPPSSPSQSPAFKPILYMAPSDEINGETKT
SYVWEKGSPIYAIPEDIKGLIKKDIVPAVLKQPLSPSTYKHYFAALLYAEDFYFEKWSDF
QLQNVILELQEAQIYKRSNEYKNYNRNVEKDDKIFVVFEIDSVPEKRPFLLSRDLVYARP
SGKTVEPFKGLIYRVVKSTCVLVEFGDDFHSQHCSTRKYDISFSFNRVCLKRAHQAVEAA
SHPLLLNFLFPECISRKNILNPPVRAYQELGADQFSAVHRILSFRSSPPYLLCGSLSVNR
ANKSLSRTGVVVREAVFEAYKTFPDNRILVCAPINSTCDELNRSLKVEIPESDIFRANAA
FREIDEVPIDILSSCIIERELFACPSLQHLRKYRIILSTFVSSFRLHNEGIAAGHFSHIF
LVDASSTTEPEAMVALANFANDNTSVIVTGAPGDSSGWVRSDVGRKYGLRKSYFERLLEL
GPYRIPNNPMFITKLDDFDR
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atggacgacgtgaatccgcttctaaaattcttgcaatgcatcctttgttgccatgtagaa
cgtcatgatgataatgatgatttaacttgctgcataaagccttttcgagaatattttcgt
gcaaactctcggaacagaaatccggaatacgaatatcttcctgtggatacaaccccacca
agttctccaagaccacgggtgactctgagtgctccattttgtcaaccaattgttggcgat
tcacctacattttcttatagaccatctcaatcttcctataaaccaccccaatcttcttat
agtccatctccttcgtcctctaaatccgcaacatcttcatctgaaccgtctccagctttc
cccaatgctttgttatcttcctccaaaccatctcagtctatatcaaaacctaatctgcct
ccctcttcttttagtccatctgcatcttctccaacttactctaaaccacctcaatcttca
ccttcactggccccatcttcagctaatccactcccgtcagccccgaaacccgcatcttct
cataaaccatctctatcttcccctaaagaacttccatattcctctggaccgtcgccattt
ccccacaatggacctccttcttcctctcggccaccaccatcatccccttcgcaatctcca
gcctttaaaccgattctttatatggctccctctgatgaaataaatggagaaacgaagacg
agttatgtatgggaaaagggttcacctatatatgcaattcctgaggatatcaaaggtcta
atcaagaaagacattgtgccagcagttctaaagcagcctttgtctccttcaacttataag
cattactttgctgctctgttatatgctgaggatttctactttgagaaatggagtgatttc
caattgcagaacgtgattttggagttgcaagaagctcaaatttataaaaggtcaaacgag
tacaaaaattataatagaaatgttgagaaggatgataaaatctttgtggtatttgagatt
gattctgttcctgagaagcggccattccttttatcaagagacttggtctatgcacgacct
tcgggtaaaacagtcgagccgtttaagggtttgatctatcgcgtggtgaagagcacgtgt
gtattagtcgaatttggagatgatttccattcacagcattgttcaactcgcaaatatgac
atcagcttctcattcaacagagtatgtctaaaaagggctcatcaggcagtagaagctgca
tcacatcctttgctcctgaacttcctctttcctgaatgtatctcccgaaagaacatccta
aacccaccagttcgggcctatcaggaacttggtgcagatcagttctccgctgttcatcgc
attttaagctttcgcagctcaccaccttatcttctttgcggctcactcagtgtaaatagg
gcaaataagtctctatcaagaactggagttgttgttcgagaagcagtatttgaagcatat
aaaaccttcccagataatcgaattcttgtatgtgctcctataaacagcacatgtgatgag
ctgaacagaagtctaaaggtagagatcccagagtcggatatatttcgagccaacgctgca
tttcgagagatagatgaggttcctattgacattcttagctcatgcattatagagcgggaa
ttatttgcttgtccttcactccagcatcttaggaaatacaggataattctatcaactttt
gtgagtagctttcgattgcacaatgaaggcatagctgctggacattttagccatattttt
ctagtggatgcctcatcaaccacggagccagaggcaatggtagctttggctaattttgct
aacgataatacatcagttatagttactggtgcacccggagactcttcaggttgggtccgc
tctgacgtgggtaggaaatatggattgaggaaatcatattttgaaagacttcttgaactc
gggccatataggatccccaacaatccaatgttcatcacaaagctggatgactttgaccga
tag
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