Corylus avellana (European hazelnut): 132178964
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Entry
132178964 CDS
T09426
Name
(RefSeq) probable RNA helicase SDE3 isoform X1
KO
K18422
helicase MOV-10 [EC:
5.6.2.5
]
Organism
cave
Corylus avellana (European hazelnut)
Brite
KEGG Orthology (KO) [BR:
cave00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cave03019
]
132178964
03036 Chromosome and associated proteins [BR:
cave03036
]
132178964
Enzymes [BR:
cave01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
132178964
Messenger RNA biogenesis [BR:
cave03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
132178964
Chromosome and associated proteins [BR:
cave03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Other miRNA pathway proteins
132178964
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
MOV-10_beta-barrel
AAA_30
AAA_19
ResIII
AAA_22
UvrD-helicase
Mov-10_helical
DEAD
Helicase_RecD
AAA_16
PhoH
SLFN-g3_helicase
AAA
LTD
ATPase_2
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
132178964
NCBI-ProteinID:
XP_059447540
LinkDB
All DBs
Position
ca4:complement(23101121..23106775)
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AA seq
889 aa
AA seq
DB search
MLLCLVMDSFGDKWGDKSDDECSTIGDKGEIGFIDYADDKSVCSYNTIEEGPIVISAPFA
FVEGKPQSAAVGETAADSVTIKNTTGDAVNLWSVTIFASNPENSFKLSLMKPPSANETTS
GYVDFFSLEDRTIQPGETLTIWFSCEPKEIGLHTSVVYFDVESERIERVVFLMVDDKISQ
SLVSRKPYSRGRRKTQFVDNSAFVTGVRPAKATDRVFKNRLPRYDIPEKIRELLESKQIP
DVVQEGLTMENYSSFFEKLVIMEEIQLEKDMRSHDMECVPMRKRGNRYLSLEVPGLAEKR
PSLVQGDFILAKLACENGNDTARKYQGYIHRVEADEVYLMFAPEMHLHHKDGNLYNVQFS
YNRINMRRLYLAIEATDELAIEFLFPSESFNRRLIETTPLVPISCNLNPEQMCSIEMILG
CKGAPPYVIHGPPGTGKTMTVVEAILQLYTTRKDARILVCAPSNSAADHILEKLLSEKAV
EVRETEIFRLNASSRPYDDVSPNIIRFCFFDDHIFKCPPRGAVMRYRIFISTYMSASLLH
AEGIRRGHFSHIFLDEVGQASEPETMIPISKLCQKNTVVVLAGDPRQLGPVIYSKEAETF
GMGKSYLERLFESDFYYNGDENYVTKLVRNYRCHPEILYLPSMLFYNGELIACKDDTSSF
VDTVNLLPNKEFPVLFLGIQGCDEREGNNPSWFNRIEASKVVEVIRRLTSSGDLSEEDIG
VITPYRQQVLKIKKALEGLEMPDIKVGSVEQFQGQERQVIIVSTVRSTIKHNEFDKKYCL
GFLSNPRRFNVATTRAISLLVIIGNPHIITKDRYWSKLLWHCVDNKSYQGCSLPDRQEFV
DEDCTQGDYLNCDEENTPPPQEGERSQDSWKEDYPKPVTDEAEWSDGWK
NT seq
2670 nt
NT seq
+upstream
nt +downstream
nt
atgcttctctgcttagtgatggattcctttggtgacaagtggggtgataagtcggatgat
gaatgctctaccattggagacaaaggagaaatcggttttattgattatgcggatgacaaa
tctgtgtgtagttacaacacaattgaagagggtcctattgttatttctgccccatttgct
tttgtggagggaaagcctcaatcagcagccgtaggagaaactgctgcagattcggttact
atcaagaacactactggtgatgcagtgaatctctggtctgttacaattttcgcctcgaat
cctgagaactctttcaaactttctctaatgaagcctccatcagcaaatgaaaccaccagc
ggctatgtagactttttctccttggaggacaggacaattcagccaggggagactttgacc
atatggttctcttgcgaaccaaaggaaattggcttgcacacttcagttgtgtactttgat
gtggagagtgaaaggatagaacgagtggtttttcttatggttgatgataagatttcacag
tctttggtttctagaaagccatattcaagaggcagaaggaagacgcagtttgttgacaat
agtgcgtttgttacgggcgtgcgtcctgcgaaggccacagaccgagttttcaaaaacaga
cttcctcgatatgacattccagagaagataagagaattacttgagagcaagcagatacct
gatgttgtccaagaaggtcttacgatggagaattactcttctttcttcgaaaaattagtg
atcatggaagaaatacaactggagaaagacatgagaagtcatgacatggaatgtgtccct
atgagaaagaggggaaatcgatatttgtctcttgaggtccctggcctggctgagaaaagg
ccttcacttgtccaaggggattttattcttgccaagcttgcctgtgagaatggaaatgac
acggctcgtaaatatcagggttatatccaccgtgttgaggctgatgaagtatatctgatg
tttgctccagagatgcacttgcaccataaagatgggaatctctataatgttcagttttca
tataatcgaattaacatgagaaggttatatctagccattgaagctacagatgaattagca
atagagttcctatttccgtctgagtcctttaacaggaggctcattgaaaccactccactg
gtgcctatatcttgtaatctcaatccagagcagatgtgttcgattgaaatgatccttggc
tgcaaaggagccccgccttatgtgattcacgggcctccaggtacgggtaagactatgaca
gtagtagaagcaatccttcagctctacacaactcgaaaggatgctcggatacttgtgtgc
gcaccttcaaatagtgcagcagaccacattctagagaaactcctcagtgaaaaagctgtt
gaagttcgagagactgaaatattcaggctcaacgcatcttcccgtccatatgatgatgtc
tcacctaatataatccgcttctgcttctttgatgatcatatcttcaagtgtcctccacgt
ggtgccgtcatgcgatataggatcttcatatcaacttatatgagtgcctctcttcttcat
gcagaaggtattaggcgaggacacttctctcatattttcttggatgaggttggccaagct
tcagaaccagaaaccatgattcctatatccaaactctgtcaaaaaaatacagttgttgtt
cttgctggagacccgaggcagttagggccagtaatatactccaaagaagcagaaactttt
ggaatggggaaatcatacttggaaagattgtttgaatctgacttttactacaatggggat
gaaaattatgtaacaaaattggttagaaactatagatgtcacccggaaattctttatcta
ccttcgatgctgttctataatggagaattaattgcatgtaaagatgacacaagttccttt
gtggatactgtgaatctccttcctaacaaggagtttcctgttcttttcttgggtatccaa
ggttgtgatgagagggaaggaaataatccatcatggtttaaccgaatcgaggcaagcaag
gtagtcgaggtcataaggcgactgacttctagtggggatctcagtgaggaagatattggg
gtaataacgccttataggcagcaagtgctgaaaataaagaaagcccttgaaggtttggag
atgcctgatatcaaggttggaagtgttgaacaatttcaaggacaagagaggcaagtcatt
attgtatctactgtccggtcgacgatcaaacacaatgaatttgacaagaagtattgcttg
ggatttttgagcaatccaagaaggtttaatgtggctactacccgtgctatatctttgcta
gttataattgggaatccgcacatcatcaccaaggaccggtactggagcaagctcttatgg
cattgtgtagacaacaagtcttatcagggttgttctctccctgataggcaggaatttgtt
gatgaggactgcacacaaggtgattacttgaactgtgatgaagaaaacactccaccccct
caagaaggtgaaaggagtcaagattcttggaaagaagattatcctaaacctgttacagat
gaggctgaatggtctgatggttggaagtaa
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