Corylus avellana (European hazelnut): 132180358
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Entry
132180358 CDS
T09426
Name
(RefSeq) sister chromatid cohesion protein SCC2
KO
K06672
cohesin loading factor subunit SCC2
Organism
cave
Corylus avellana (European hazelnut)
Brite
KEGG Orthology (KO) [BR:
cave00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cave03036
]
132180358
Chromosome and associated proteins [BR:
cave03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Adherin complex
132180358
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nipped-B_C
Cohesin_HEAT
PDS5
PHD
PHD_2
zf-RING_16
BIG2_C
VPS18_RING_C
Motif
Other DBs
NCBI-GeneID:
132180358
NCBI-ProteinID:
XP_059449134
LinkDB
All DBs
Position
ca5:31998033..32017659
Genome browser
AA seq
1817 aa
AA seq
DB search
MSNPIGSDSASGFSGWGNRGIGLSNTVHSEVAPCLPLPSLPVFCGASDQDLLLFDVPGGG
SFKSLNRSEILAQSNRIADLLRQTDVSYLNLKNDARAAPYGHVEPLELHDQVLQCYPEAF
ECGTAGPIKEQISSSTVSEKTPFKQSVPITSQAQRDYSATQNYHPDYVVPNNVSTPPSRK
PKVRKKGSNDFSSSVGVDAAELQDATIGSFCELMEDFCGRAEIPTDDRDEAEWLSLPLSD
LRMVVNEIMSIRAKKLLHLVPVDILVRLLRVLDHQIHRAEGLSIDDYEHSDSDVVSSIFC
ALESIHAALAVMGNDQMQKQLYKEEIIERILEFSRHQIMDIMCAYDPSYRALHKPSENGE
LEGDEDEELDADFGSASKKRRITKTVKVKKSSLNKVSAAVNTILQKMCTILGLLKDLLLI
ERLSDSCILQLVKTSFTTFLVDNIQLLQLKAIGLISGIFYSYTQHRTYVMDEILQLLWKL
PSSKRALRSYHLPEEEQRQIQMVTALLIQLVHCSANLPEALRQVSSGNSILEVSIDCSYP
NKSHEAATEACCLFWTRVLQRFATLKTQDVSEMKLVMENLVMDLLTTLNLPEYPASAQVL
EVLCVLLLQNAGLKSKDISARTMAIDLLGTIAARLKRDAVLCRRDKFWVLQELVNADGVD
HRYPKDACSICLDGRVEKLFFICQSCQRLFHADCMGVSEHEVPNRSWQCQICLCRKELLV
LQSYCNSQCKDDGKKSHKHSEKNPEASDPITKVEIVQQLLLNYLQDVGSSDDVHLFVRWF
YLCLWYKDDPKSQQKFTYYLARLKSKAIVRDSGTASSLLTRDSVRKISLALGQNNSFSRG
FDKILHMLLASLRENSPVIRAKALKAVSIIVEADPEVLRDKRVQLAVEGRFCDSAISVRE
AALELVGRHIASHPDVGLQYFEKVAERIKDTGVSVRKRAIKIIRDMCTSNGNFSEFTSAC
IEIISRVSDDESSIQDLVCKTFYEFWFEEPSGSEAQYFGDGSSVPLEVAKRTEQIVEMLR
RMPNHHLLVTVIKRNLALDFFPQSAKAAGINPVSLASVRKRCELMCKCLLEKILQVEEMN
NEEMEVSALPYVLVLHAFCVVDPTLCAPASDPSQFVVTLQPYLKTQVDNRMVAQLLESVI
FIIDSVLPLLRKLPQSVVEELEQDLKHMIVRHSFLTVVHACIKCLCSAGKIAGKGAIVIE
HLIQVFFKRLDAQPVDNKQLVGRSLFCLGLLIRYGKSLLTDYSNKIIDVVGSLSLFKKYL
LVEDFIVKVRSLQALGFVLIGWPEYMLEKDIGKILEATLSSGCDVRIKMQALQNMYEYLL
DAESQMETDKASNNVIHCSVEGGHSVPVAAGAGDTNICGGIVQLYWDNILGRCLDFNEQV
RQFALKIVEIVLRQGLVHPITCVPYLIALETDPQEVNSKLAHHLLMNMNEKYPAFFESRL
GDGLQKSFIFIQSISGVHENVNLKVQSKIPGNVKGKSDGVSLAQGRLGVSRIYKLIRGNR
VSRNKFMTSIVRKFDNPTWNDSIVPFLMYCSEILALLPFTSPDEPLYLIYTINRVIQVRA
GALEAKMKALSMHLSQRYTEKVSYKNGQPEPAVHPNFNEMASMDLNGTIQHEPAGQPIFN
HMMSMDLNESIQQDAADLLVSNHSTSWGAKTRSMGSGVSCVLSEDDLQKVQADCLAAIAL
QLLLKVKRHLKIVYSLNDSRCQAFSPNEPVKPGEVLSRQNVPLSLGGTSTSLPTTYQELV
QRYQEFKSSLKEDTVDYSIYTANIKRKRPTPRKGRKSGYMGGEDDEDDGGDEDWTGGARR
LSNSGRKGNNSRGSRQR
NT seq
5454 nt
NT seq
+upstream
nt +downstream
nt
atgagcaatccaattggttcggattcggcctcgggcttctccggctggggcaaccgtgga
atcggcctctcgaacacggtacactcggaggtcgcgccgtgcttgcctctgccctcgctc
ccggtgttctgcggcgcatccgatcaggatctcctgctcttcgacgtgcctggcggtggt
agctttaagtcgctgaaccgcagcgagattcttgctcagtctaatcgaatcgccgatctg
cttcgccaaaccgatgtgtcctacttgaatctaaaaaatgatgcaagggcagctccatat
ggccatgtggagcctttagaattacatgaccaggttctacaatgctatccagaagcattt
gagtgcggtactgcaggtcctattaaggagcaaatctctagcagtacagtatcagaaaag
acgcccttcaagcaaagtgtacctattacaagtcaagctcaaagagactatagtgcaacc
cagaattatcatcctgactatgttgttcctaataatgtatcaactccgccttctagaaaa
ccaaaagtcaggaagaaaggtagtaatgatttctcatcatcggttggagtggatgctgct
gagcttcaagatgccactattgggagcttttgtgagttgatggaggacttctgtggcaga
gctgaaattcctactgatgatcgggatgaagcagagtggttatcactgcctctttctgat
cttagaatggttgtaaatgaaataatgtctatccgtgcaaagaaacttctacatttggtt
cctgtagatattcttgttaggctgttaagggttctagatcatcagatacatcgagcagaa
ggcttgtccattgatgattacgagcattcagattcagatgtagtttcatcgattttttgt
gctctggagtccattcatgcagctttagcagtaatgggtaatgaccaaatgcaaaagcag
ctttataaagaagagataattgaaagaattctggagttctcccggcatcagataatggat
atcatgtgtgcttatgatccatcatatcgtgctttgcataaaccaagtgaaaatggggaa
cttgaaggtgacgaagatgaagagcttgatgctgactttggttctgcaagcaagaagcga
cgtattactaagactgttaaagtgaagaagtcgtcattaaacaaggtctctgctgccgtg
aatactattcttcagaaaatgtgcactattcttggtttactcaaggatttgttgttaata
gagaggttatctgatagttgcatcttacaacttgtgaagacgagctttacaacattcttg
gtggataatatccagctcttgcaacttaaagcaattggtttaatcagtgggatattctat
tcatacactcagcatcgcacttacgtgatggatgaaatacttcagctgctctggaaatta
ccatcctcaaagcgagcactaagatcctatcacctacctgaagaagaacagagacagatt
cagatggtaactgctttgctgattcagttggttcactgtagtgcaaaccttcctgaagct
ttaaggcaggtatcaagtggcaattccatattagaagtctcaattgattgtagttaccca
aacaaaagtcatgaggcggccacagaggcatgttgtcttttttggacccgtgtgcttcag
cgctttgcaactttgaagactcaagatgtgtctgagatgaaattagtgatggagaatctt
gttatggatttgctgacaacattgaatttacctgaatatccggcttcagctcaagttttg
gaggttctgtgcgtcttgctactccagaatgctggactgaaatctaaagacatctctgca
cgtacaatggccattgaccttcttggtaccatagctgcgaggttgaagcgtgatgctgtc
ctttgcaggagggacaaattttgggtattacaggaattggtcaatgctgatggtgttgac
cacagatatccaaaagatgcatgttctatctgtttggatggaagggttgaaaaattgttt
tttatatgtcaaagttgtcagagattgtttcatgctgattgcatgggagtaagcgaacat
gaagttcctaacagaagctggcagtgtcagatttgcctctgcaggaaagaacttctcgta
ttacaatcatattgcaattcacagtgcaaggatgatgggaaaaagagtcacaaacactca
gaaaaaaatcctgaagcctctgatccaattacaaaagttgaaatcgttcaacagttgcta
ctgaattacctccaagatgttggttcttctgatgatgtgcatctctttgttcgctggttt
tatctctgcttgtggtacaaggatgatccaaaatctcagcagaagtttacttactacctt
gctagattgaaatcaaaagcaatagtgcgtgattctggaactgcttcttcattgttgaca
agggattcagtcaggaagatttctttagcattgggacaaaataactctttctccagaggg
tttgataagattcttcatatgcttctggcaagtttgagggagaactctcctgtaatcagg
gctaaggctctaaaagcggttagtattattgtagaagctgatcccgaggtattgcgtgat
aaacgtgttcagctggctgttgaaggaaggttttgtgactctgcaatatctgtaagggag
gcagctttggaacttgtcggcaggcatattgcttcacatcctgatgttggtttgcagtac
ttcgagaaggtagctgaaagaatcaaagatactggtgtcagtgttcgaaaacgagcgatc
aaaattattcgagatatgtgcacttcaaatggaaacttctctgaatttacgagtgcatgt
attgagataatttctcgtgttagtgatgatgaatcaagtattcaggatcttgtttgcaag
acattctatgagttctggttcgaggagccttctggttctgaggctcagtattttggagat
ggtagttctgttccactggaggtggctaaaagaactgagcagattgttgagatgttgaga
aggatgccaaatcaccaccttcttgtcactgtcatcaagcgcaacttagctcttgatttt
tttccacaatcagctaaagctgctgggatcaaccctgtgtcccttgcatcagtgcgcaag
cgttgtgagttgatgtgcaagtgcttattggaaaagatattgcaggtagaggaaatgaac
aatgaggaaatggaggtgagtgcacttccttatgtgctggtcttgcatgcattttgtgtt
gtggatccaacgctctgtgcccctgcctctgatccatcacagtttgtggttactctacag
ccatatcttaagacacaggttgataatcgaatggttgctcagttactagagagtgtaatt
tttataattgattctgtgttgccattgctccgaaagttacctcaaagtgttgttgaagaa
ctcgagcaagacttgaagcacatgattgttcggcattccttcttgacagttgtccatgct
tgcatcaagtgtctttgctctgcgggaaaaattgcaggaaaaggtgctattgtgattgag
catcttattcaggtgttctttaagcgtttggatgctcaaccggttgataacaagcagcta
gttgggcggtctcttttttgccttggattgcttatccgctatggcaaatctttgctgact
gactatagtaacaaaattattgatgttgtcggtagtctcagcttgttcaaaaaatatctc
cttgtggaggatttcattgtaaaggttagatcattgcaggcattaggctttgttctaatt
ggttggcctgaatatatgttggaaaaagatattgggaaaatattagaggcaactttgtct
tctggctgtgatgttcgtatcaagatgcaagcattgcaaaacatgtacgaatatcttctt
gatgcggaaagtcaaatggaaacagataaagcaagtaacaatgtaattcattgttctgta
gaaggtggccacagtgtgcctgttgctgcgggtgcaggagataccaacatatgtgggggt
atagttcagttgtattgggataatattttaggtagatgtttggacttcaatgagcaagtt
cgccaatttgctcttaagattgttgaaattgtgctgcgccaaggtctcgttcatcctatt
acttgtgtcccatacctcattgcacttgaaacagatccacaggaggtgaattcaaagttg
gctcatcatttgctgatgaatatgaatgaaaagtaccctgcattttttgaaagccgtttg
ggggatggccttcaaaagtcattcatctttatacaatccattagtggtgttcatgaaaat
gtgaacctgaaggtccaatccaagattccaggaaatgtgaaggggaaatctgatggtgtc
tctttggctcaaggaaggcttggtgtttctagaatctacaaactcatccgtggaaaccgg
gtttcaagaaacaaattcatgacctcaattgtgcgaaagttcgataacccaacctggaat
gattctatagtccctttcctgatgtactgttctgaaattcttgctttgctaccatttaca
tcacctgatgagccactatatttgatctatactataaatcgagttatacaagttagggct
ggggcacttgaggcaaaaatgaaagccctgagtatgcatttgtcacaaagatatacagag
aaggtatcttataagaatggacaaccggagccagctgttcatcctaatttcaatgagatg
gcttctatggatttgaatgggacaattcaacatgaaccagctggtcagcctattttcaac
catatgatgtcaatggatttgaatgagagtattcaacaagatgcagctgatctgttggtc
tcaaatcatagtacctcttggggggcaaagacgcgtagtatgggctcaggtgtttcttgt
gttctttctgaagatgatctgcagaaagttcaggccgactgtctggcagccattgcattg
cagcttcttctgaaggtaaagaggcacctaaaaattgtctatagcttgaatgattctcgg
tgccaggctttttctccaaatgaacctgtaaaaccaggagaggttctctccaggcaaaac
gttccccttagcctcggcggaacatccaccagtttgcctaccacttatcaagaattggta
caaagatatcaggaattcaagagttctctgaaggaagatactgttgattactctatttat
acagcaaatatcaagaggaagcgccctacccccagaaaagggcggaaatctggatacatg
ggtggtgaggatgacgaagacgacggtggtgatgaagactggacaggtggggctcgcagg
ctaagtaatagtgggaggaagggtaacaacagtagaggaagtaggcaacgatag
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