Corylus avellana (European hazelnut): 132180460
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Entry
132180460 CDS
T09426
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
cave
Corylus avellana (European hazelnut)
Pathway
cave03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cave00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
132180460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cave03019
]
132180460
03041 Spliceosome [BR:
cave03041
]
132180460
03009 Ribosome biogenesis [BR:
cave03009
]
132180460
03016 Transfer RNA biogenesis [BR:
cave03016
]
132180460
Enzymes [BR:
cave01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
132180460
Messenger RNA biogenesis [BR:
cave03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
132180460
Spliceosome [BR:
cave03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
132180460
Complex C
U4/U6.U5 tri-SnRNP related factors
132180460
Ribosome biogenesis [BR:
cave03009
]
Eukaryotic type
Pre-60S particles
Helicases
132180460
Transfer RNA biogenesis [BR:
cave03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
132180460
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
Motif
Other DBs
NCBI-GeneID:
132180460
NCBI-ProteinID:
XP_059449280
LinkDB
All DBs
Position
ca1:24486645..24509538
Genome browser
AA seq
1000 aa
AA seq
DB search
MDALTGSSKRRSAEDPPGDTLLPQKRHQRDNDSPLALGEELLACLHDVSHPEGYVAPPPR
SPSSSAPPPPAKVFEFTLDPFQSEAIKCLESGESVMVSAHTSAGKTVVALYAIAMSLQNK
QRVIYTSPIKALSNQKYREFKEEFSDVGLMTGDVTIEPNASCLVMTTEIWRSMQYKGSEI
TREVAWIIFDEVHYMRDRERGVVWEESIVMAPKNSRFVFLSATVPNAKEFADWVAKVHQQ
PCHIVYTDYRPTPLQHYIFPSGGDGLYLVVDEKGKFREDSFQKALNALVPASEGDKKKEN
GKWQKGLPLGRVGEDSDIFKMVKMIIQRQYDPVILFSFSKRECEFLAMQMAKLDLNGDDE
KANIETIFWSAMDILSDDDKKLPQVSNILPLLKRGVGVHHSGLLPILKEVIEILFQEGLI
KCLFATETFSIGLNMPAKTVVFSNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDKRGICI
LMVDEKLEPSTAKMMLKGNADCLNSAFHLSYNMILNQMRCEDGDPENLLRNSFYQFQADR
AIPSFEKQIKDLEEERGSIIIEEEDSLKNYYDLLQQYKSLKKDVRDIVFSPKYCLPFLQA
GRLVCIQCTRTEEVSPSFSIEDQVTWGVIVNFQRVKSVSEDDSSRKPEDADYTVDVLTRC
IVGKDGIAKKTIKIVQLKEPGEPLVVSIPISQIINLSSNRMVIPKDLLPLEIRENTLKKV
SEGLSRFPEKGSHLLNPEEDFKIQSNSYKKAARRIEALESLFDKHEVAKSPLIEQKLKAF
HMKQQLTAKIKLLKKTIRSSTTLAFKDEFKARKRVLRRLGYVTNDDVVELKGRVACEISS
ADELTLTELMFNGVLKEITVEQMVSLLSCFVWQEKLQNATKPREELDLLFAQLQDTARKV
AKVQLECKVQIDVENFVNSFRPDIMEAVYAWAKGSKFYEIMEITQVFEGSLIRAIRRLEE
VLQQLIQAAQSIGETELESKFEEAVSKIKRDIVFAASLYL
NT seq
3003 nt
NT seq
+upstream
nt +downstream
nt
atggacgctcttacgggatcctcgaagaggaggtcggcagaggacccgcctggagacact
cttcttccgcagaaacggcaccagagagataacgattcgccgctcgcccttggcgaagag
cttctggcctgcttgcacgacgtgtcgcacccggagggctatgttgctcctcctcctcgc
tctccctcctcttctgcgccgccgccgcctgccaaagtcttcgaattcaccctcgaccct
ttccagtccgaagccatcaagtgcctcgaaagcggcgagtccgtcatggtgtcggcccat
acttcagctgggaaaactgttgtggcattgtatgctattgctatgtcattgcaaaataag
caacgggtcatatacacttctccaatcaaagcgctcagcaaccaaaaatatagggagttc
aaagaagagttttcagatgttggcttgatgaccggtgatgtgactattgagcccaatgct
tcttgcttggtgatgactacagaaatatggcgtagtatgcagtacaaaggatcagagatt
acacgggaggtcgcttggattatttttgatgaggtgcattacatgcgtgaccgggaaaga
ggtgtagtgtgggaagagagcattgttatggcaccaaaaaactctagattcgtattcctc
tcagcaaccgtgcctaatgcaaaggaatttgctgattgggttgcaaaggttcaccagcaa
ccctgtcacattgtttatactgattataggccaacaccacttcagcattatattttccct
tcgggaggtgatggtctatacttggtagtggatgaaaaaggaaaatttcgcgaggatagt
tttcagaaagctttaaatgcacttgttcctgctagtgagggtgacaagaaaaaggagaat
gggaagtggcaaaagggtttgcctttgggcagagttggtgaagatagcgacatcttcaag
atggtaaaaatgatcattcagcgtcaatatgatcctgtcatacttttcagctttagcaaa
agggaatgtgaatttcttgcgatgcagatggcaaaattggatctgaatggggatgatgag
aaagcaaacatagaaactatcttctggagtgctatggatattctttcagatgatgataag
aagttacctcaggtttcaaatattttacctctcttgaaacgtggagtaggcgtgcatcat
tctggcttgcttcccattttgaaggaagttattgagatactatttcaagaaggactaatt
aagtgtttgtttgccacagagaccttcagcataggcttgaatatgcctgcgaaaactgtg
gtattttcaaatgtccgtaaatttgatggggataagttcagatggatatcgagtggagag
tatatacagatgagtgggcgtgctggtcgtcgaggtattgataaacgtggaatatgcatc
cttatggtagatgagaaactggaaccttctactgctaaaatgatgcttaaaggaaatgct
gattgtttgaacagtgccttccatttaagttacaacatgattttgaatcaaatgcgctgt
gaagatggcgatcctgagaatttgctccgtaattcattctatcagttccaagccgaccgt
gccattcctagttttgagaaacaaataaaggatcttgaagaagagaggggttcaattata
attgaagaagaagatagtttgaagaattattatgatctgctacagcagtacaagagcttg
aagaaggatgttcgtgatattgtattttctccaaagtactgcttacctttccttcaggct
ggaaggcttgtgtgtattcaatgcactcggacagaagaagtttccccatctttctctatc
gaggaccaggtcacatggggagtgatagtaaattttcaaagagtgaaaagtgtatctgaa
gatgattcaagtagaaagcctgaagacgcagactacacagtggatgttcttacaaggtgc
atagtgggcaaggatggaattgccaagaaaaccattaagattgttcaattgaaagagcct
ggagaacctcttgttgtttctatccccatctctcagatcattaatttaagtagtaatcgg
atggtcataccaaaggatcttttgcctttggaaattcgagaaaacacattgaagaaggtt
tctgaaggactttctagatttcctgaaaaagggtcacaccttctaaatccagaagaagat
ttcaagatccaaagtaactcatacaaaaaagcagctcgtagaatagaggctctagagagc
ctttttgacaagcatgaagttgctaaatctccccttattgagcaaaagctcaaagctttt
catatgaagcaacaattgacagccaagatcaagttgcttaagaagacaatacgatcttcc
actacgttggcttttaaagatgaattcaaggcaagaaaaagggttcttcggaggctagga
tatgtcacaaatgatgatgttgtggagctgaaggggagagttgcttgtgaaatcagtagt
gcagatgagttgaccctaacagagctaatgttcaatggggttttaaaggagataacggtg
gaacagatggtttctctcctttcttgttttgtctggcaggagaaacttcaaaatgctacg
aagcctagggaagaacttgacttgctctttgcacaactacaagatacagctcgaaaggtc
gccaaagttcagcttgagtgcaaggtccaaattgatgttgagaactttgtgaattcattc
cggcctgatatcatggaagctgtgtatgcttgggcaaaaggatcgaaattctatgagata
atggaaatcacacaagtttttgagggcagcttgatcagggcaattcgtagactggaggaa
gttcttcagcagctcatacaagcagcccaatctattggggaaacagagcttgagtcaaaa
tttgaagaggctgtttccaagatcaagcgagatattgtgtttgcagcgtctctgtacttg
tag
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