Corylus avellana (European hazelnut): 132180792
Help
Entry
132180792 CDS
T09426
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6-like isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
cave
Corylus avellana (European hazelnut)
Pathway
cave03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cave00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
132180792
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cave03019
]
132180792
03012 Translation factors [BR:
cave03012
]
132180792
Enzymes [BR:
cave01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
132180792
Messenger RNA biogenesis [BR:
cave03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
132180792
Translation factors [BR:
cave03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
132180792
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
R3H
DEAD
HA2_C
HA2_N
nSTAND3
ATPase
Ank_2
Ank_5
AAA_19
ResIII
AAA_22
ABC_tran
AAA_7
Rad17
AAA_25
PhoH
Sigma54_activat
Motif
Other DBs
NCBI-GeneID:
132180792
NCBI-ProteinID:
XP_059449721
LinkDB
All DBs
Position
ca5:21147224..21181933
Genome browser
AA seq
1246 aa
AA seq
DB search
MTKKKKQKKGRQNFKLADVTKNIAEATTISISEQLQKFHESKDDVYKFEDDLSNRERAAV
HLLCRKMGMTSKSTGHGSQRRVSVYKTKKNVDNTKDLDSLTYLTFSEEANMVLQDLFTRY
PPDDGEVDNAMVGKKTEKIDKIRQKKDDIFCKPSMSGAEIAKKVESLASKMEKVAYLKQV
TKKRSELPITSFRNVITSTIDSHQVVLISGETGCGKTTQVPQFLLDYMWSKGEACKIVCT
QPRRISATSVAERISYERGGNVGDDIGYKIRLESKGGRNSSIVFCTNGILLRVLISCGGG
RSKREAGMKPAKQDFPDITHIIVDEIHERDRYSDFMLAILRDMLHSFPHLRLILMSATID
AERFSQYFGGCPIIRVPGFTYPVETYYLEDVLSILKSKEHNHLNNTISSLPTEDTELTEE
DKLALDEAIYLAWTNDEFDPLLELVSSEGTQKVFNYQHSLTWVTPLMVFAGKGRVADVCM
LLSFGAECHLQAKDGSTALEWAERENQLEAAEIIKKHLGSTISNSSEEQQLLDKYLGTVD
PEHIDVGLIVQLIKKICIDSQDGAILVFLPGWEAINKTREKLIASPFFTNTSKYLIMCLH
SMIPSVEQKKVFNSPPPGCRKIVLATNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVST
LQSSWVSKASAKQREGRAGRCQPGICYHLFSKFRAASLPEFQLPEIKRIPIEELCLQVKL
LDPNCKIEDFLQKTLDPPVFEAIRNAVLVLQDIGALSVDEKLTELGEKLGSLPVHPLTSK
MLFFAILMNCLDPALTLACASDSKDPFTLPMLPQDKMRAEAAKSELASLYGGHSDQLAIV
AAYECWMNARQMGQEARFCSEYFVNKGTMHMLHGMRKQLQYELVRNGFIPGDISSCSLNA
RDPGVLHSVLVAGLYPMVGRLRPPHKNGKRLIETAGGDKVRLHSFSINSRLSTRKSKDCP
LIVYDEITRGEAGMIIRSCTVTGPLPLLLLATEIAVAPAKEDDNDDEDDDDDSSDDGADE
DESDEDAMEIDNHSGGQREGKIMSAPENSVKVIVDRWLFFGSTALDVAQIYCLRERLAAA
ILFKVTHPKTMLPPVLGASMHAMTRILSLDGLSGISVPLEAVDRLTSMVNATEIDKSAPG
RSKGLVQNSNGFLRSLMNPRTHQQSPSRHHNTRLPAPMGTTYLGNPSSHKVQPPLNSAGM
NQYQRPASRGPGPGPGPSVDGNSFGMLGQHGPRGDSLKRQRGNGSR
NT seq
3741 nt
NT seq
+upstream
nt +downstream
nt
atgacaaagaagaagaaacagaagaaaggacgccaaaacttcaagttggctgatgtaaca
aagaacattgctgaagctacgacgattagcatatccgaacaactgcaaaagttccatgaa
tcaaaagatgacgtttacaagtttgaagatgacctgtcaaaccgcgaacgtgcagcagtg
catttattatgcaggaaaatgggtatgacttccaagagtacagggcatgggagccaacgg
cgagtttccgtgtacaaaactaaaaagaatgttgacaacaccaaggatttggacagtctc
acttatttgacattttcggaagaggcaaacatggttttacaggatttgtttactcgatac
ccacctgatgatggagaggtggacaatgcaatggttgggaagaaaactgaaaaaattgat
aaaatacgacaaaagaaagatgatattttctgcaagccttcaatgagtggagcagaaatt
gcgaagaaagtggagtcacttgcttcaaaaatggaaaaggttgcatatttgaagcaggtt
actaaaaagaggtctgagcttccaattacatccttcaggaatgtcattacatcgacaatt
gactctcaccaggtagttctcatatctggtgagactgggtgtggaaagaccacgcaggtc
cctcaatttcttctagattacatgtggagtaagggtgaggcttgtaaaattgtgtgtact
caacctcgacgtatctcagcgacctcagttgctgagagaatctcttatgaaagaggaggg
aatgttggagatgatattggatacaagatacggttggaaagcaagggtggaaggaactca
tcaattgtgttctgcacaaatgggattctattgagggtgttaatttcttgtggtggtggt
aggtcaaagagagaagctggaatgaaacctgcaaaacaagattttcctgacataactcac
attattgtggatgaaattcatgaaagggatcgctactctgatttcatgttggcaattctc
agagacatgcttcattcatttcctcatctgcgattgatacttatgagtgctactattgat
gctgaacgattttcacaatattttggtggctgcccaatcatccgtgtccctgggttcact
tatcctgttgaaacttattatttggaggacgtactttctatcctgaaatcgaaggaacat
aatcatctcaataatactatatccagtcttcctactgaggacactgagttaacagaggaa
gataagcttgctttagatgaagctatttatctggcttggaccaatgatgagtttgatcca
ctcctggaattagtttcttctgagggaacccaaaaagtgttcaattaccagcattcattg
acttgggttacaccattgatggtatttgctggaaagggtagagtggctgatgtttgcatg
ctcttatcttttggggcagaatgccatttacaggccaaggatggatctactgcgctggag
tgggctgaacgggaaaatcaactagaagctgctgaaataattaaaaaacacttgggaagt
accatttccaactccagtgaagaacaacaattgcttgataagtatctaggaacagtcgat
cctgaacatattgatgttggtcttatagtgcagttaattaagaaaatatgtattgattca
caagatggagctatacttgttttcctgccaggatgggaggctataaataaaacccgggaa
aaattaatcgcatcgccctttttcacaaatacttccaagtatctgataatgtgtcttcat
tctatgattccatctgtggaacaaaagaaggtttttaatagtccacctcctggttgccgc
aaaattgttcttgcaaccaatattgctgaaactgccattaccattgatgatgttgtgtac
gttattgacagcggtcgtatgaaggaaaaaagttatgatccttataataatgtatcaact
cttcaatcttcttgggtctcaaaagcaagtgccaagcaaagagaaggacgtgctggccgc
tgtcagcctggaatatgttatcatctcttttcaaaattccgggcggcttctttgccagaa
tttcaacttcctgaaattaagagaattccaatcgaggagctatgtctacaggtaaaattg
cttgatccaaattgcaagatagaagatttcttgcagaagacattagatcctccagttttc
gaggccatacgaaatgcagttttagttcttcaagatatcggggctttgtcagttgatgaa
aagctgactgaacttggggaaaagctaggttctctacctgttcatccattgacaagcaag
atgcttttcttcgctatattaatgaattgccttgacccagccttgactctggcatgtgcc
tctgattctaaagatccatttacacttcccatgttaccacaagataagatgagagctgaa
gctgctaaatctgaacttgcctcattgtatggtgggcacagtgatcagctagccatagta
gcagcatacgagtgctggatgaatgctaggcaaatgggtcaagaggcacggttctgttca
gagtattttgtcaacaaaggcactatgcatatgttgcatggcatgcgtaagcagctccaa
tatgaactagttcggaatgggtttattcctggtgatatttccagttgtagcttgaatgca
cgggaccctggtgtactccattcagtccttgtggctggtttgtatcctatggtggggaga
ttgcgtccacctcataaaaatggaaaacggctcatagagactgctggtggtgataaagtt
cgtttgcactctttttccattaatagtagattgtcaacaagaaaaagtaaggattgccct
ttgattgtatatgatgagataacccgcggggaagcaggtatgataataaggagctgtact
gtgactgggccgcttccattattattgcttgcaaccgagattgctgttgctccagcaaaa
gaggatgacaatgatgatgaagacgatgacgatgacagtagtgatgatggtgctgatgaa
gatgaaagtgatgaagatgctatggagatcgacaatcattcaggtggacagcgtgaaggg
aagattatgtcggctcctgaaaattcagttaaagtcattgtggatcggtggcttttcttt
gggtcaacagcacttgatgttgctcaaatttactgcttgagagagcgattagctgcagca
atcttattcaaagtaacacatccaaagaccatgcttcctcctgttttaggggcctctatg
catgctatgacccgcattctatcattagatgggctgtctggaatttcagtgccattagag
gcagtggacagattgacttcaatggtaaatgctactgagattgacaagtctgccccaggg
aggagtaaagggttggtacagaattcaaatgggttccttagatcacttatgaaccctcgc
acacaccagcaatccccttcccgtcatcacaatactagattacctgcaccaatgggaaca
acctatttgggcaatccttcgagtcacaaagttcagccgccacttaattcagccggcatg
aaccagtatcagagacctgcatcacggggtcccggtcctggtcccggtcccagtgtagat
ggtaacagttttggaatgcttggacaacatggtccaaggggagactctcttaagcggcag
cgggggaatgggtctagataa
DBGET
integrated database retrieval system
