Corylus avellana (European hazelnut): 132181176
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Entry
132181176 CDS
T09426
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
cave
Corylus avellana (European hazelnut)
Pathway
cave03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cave00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
132181176
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cave03019
]
132181176
03012 Translation factors [BR:
cave03012
]
132181176
Enzymes [BR:
cave01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
132181176
Messenger RNA biogenesis [BR:
cave03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
132181176
Translation factors [BR:
cave03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
132181176
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
nSTAND3
AAA_19
ATPase
T2SSE
Myosin_head
AAA_16
PhoH
ABC_tran
AAA_23
Motif
Other DBs
NCBI-GeneID:
132181176
NCBI-ProteinID:
XP_059450258
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All DBs
Position
ca1:complement(48939418..48970666)
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AA seq
1154 aa
AA seq
DB search
MHKSRPVAGFLFRYSRAISDRHAALSSLRSHHHRRSLLSLLLLLPSSSSALSNGRVFVAK
RGLSGYAYEQFSDDEYECDSENHTASSSVANIDEWKWKLSLLQRSEKDQEIVSKDKRDRR
DYEQISNLAKRMGLYSEIYGKVVVASKVPLPNYRPDLDDKRPQREVVIPLSLQRRVEGLL
QEHLDRVQLSSGKVNDGLDDAKSNDQVEDVHLDENADAFLDGSVMEKVLQRRSLRMRNMQ
RAWQESPEGKKMLDFRRSLPAFKEKERLLQAIAQNQVIVISGETGCGKTTQLPQYILESE
IESGRGAFCSIICTQPRRISAMSVAERVSAEKGEPLGETVGYKVRLEGMKGKNTHLLFCT
SGILLRRLLSDRDLNGITHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLVLMSATLNA
DLFSSYFEGAPTFHIPGFTHPVTAHFLEDVLEKTGYKLTSFNQIDDYGQEKLWKTQKQLM
PRKRKNQITALVEDALSKSSFENYSSRARDSLACWMPDCIGFNLIEAVLCHICRKERPGA
VLVFMTGWEDISCLRDQLKAHPLLGDPNRVLLLTCHGSMATSEQKLIFENPPPNVRKIVL
ATNMAEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQPG
ECYHLYPKCVYEAFSEYQLPELLRTPLNSLCLQIKSLQVGSIGNFLSSALQPPESLAVQN
AIDFLKKIGSLDENENLTNLGKFLSILPVDPKLGKMLIMGAIFRCFDPVLTIVSGLSVRD
PFLLPQDKKDLAGTAKSRFSAKDYSDHMALVRAYEGWKDAEREGSAYEYCWRNFLSAQTL
QAIHSLRKQFSFILRDSGLVDADASNNNRLSHNQSLVRAIICSGLFPGIASVVHRETSMS
FKTMDDGQVLLYANSVNARYQTISYPWLVFGEKVKVNTVFIRDSTGVSDSILILFGGALS
KGVQAGHLKMLQGYVDFFMDPNLAECYSKLKEELDRLVQKKLEDPSLDMHKEGKYLMLAV
QELVSGDQCEGRFVFGRESKKPKESNDSRFTKDGTNPKSLLQTLLMRAGHSPPKYKTKHL
KTNEFRALVEFKGMQFVGKPKKNKQLAERDAAIEALAWLTHTSDNRRDEDDNSPPDVTDN
MLKLLGKRRRSKRR
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgcacaagtcgaggccggtagcgggtttccttttccgatactccagggcaatttccgac
cgtcacgccgctctttcaagccttcgcagccaccaccatcgccgctctttgctcagtctc
ctcctcctcctgccctcttcttcttctgctctatctaatgggagagtgttcgttgcaaag
cgaggcctctccgggtacgcctacgagcagttctccgacgacgagtacgagtgcgattcc
gagaaccatacggcatcatcttcggtggccaatattgacgagtggaaatggaaactcagc
ctgctgcagcgtagcgaaaaggatcaagagattgtatcgaaagataagagagataggaga
gactatgagcagatctctaaccttgccaaaagaatgggactctacagtgaaatttatggt
aaagtggttgttgcaagcaaagttcctctccctaactacaggccagatttggatgacaag
cggccacaaagggaggtggtaatccctctaagcttgcagaggagggtcgagggtttatta
caggaacaccttgatcgagtccagttaagttctggaaaggtcaatgatggtttagatgat
gctaaatccaatgatcaggttgaagatgtgcatctggatgagaatgcagatgctttccta
gatggatccgttatggaaaaggttcttcagaggaggagtttgcgaatgcgcaatatgcaa
agagcttggcaggaatcacctgaaggcaagaagatgttggacttccgaagatctctaccg
gcattcaaggagaaagaaaggctgcttcaagcaatagcgcaaaatcaggtgatagtaatt
tctggggagactggatgcggtaagactactcaacttccacaatacatattagagtcagaa
atagaatctggtcgtggagcattttgtagcataatctgtacacagcctcgaagaatatct
gccatgtctgtagcagaaagagtgtctgcggagaaaggagagcctcttggtgaaacagtt
ggctataaagttcgattagagggaatgaaaggaaaaaacacccatctgcttttttgtacc
agtggtattttacttcggcggttgttgagtgatcgtgacctgaatggtataacccatgtt
tttgttgatgaaattcatgagcgaggcatgaatgaagacttcctattgattgtgttgaag
gatcttcttccacgtcgtcgggatttgcgattggtcttaatgagtgccaccctgaatgct
gacctgttttccagttattttgaaggagcaccaacatttcacattcccggctttacacat
ccagtgacagcacactttttagaagatgtacttgaaaagacagggtataagttgacctct
ttcaaccaaatcgatgattacggccaagagaaattgtggaaaacacaaaagcaattaatg
ccacggaaaaggaaaaaccagattactgctcttgttgaggatgctcttagtaaatcaagc
ttcgagaattacagctccagggcacgagattctctagcatgttggatgcctgattgcata
ggatttaatcttattgaggcagttttgtgtcatatatgtcggaaggaacggccaggtgct
gtcttagtattcatgactggctgggaagatattagctgtttgagagatcagcttaaagct
catcccctgttaggagatcccaacagggttctgctactaacatgccatgggtcgatggca
acatctgaacagaaacttatatttgagaatccaccaccaaatgtccgtaaaatagttctt
gctacaaatatggcagaggcaagcattacaatcaatgatatagtttttgtggttgattgt
ggaaaggcaaaagagactacttatgatgctttgaataatacaccttgtcttctaccttct
tggatatcacaagcatctgcacggcaaagaaggggtagggctggtcgtgtgcagccagga
gaatgttaccacctttaccccaaatgtgtgtatgaagctttctccgaatatcaacttcct
gaacttttgagaactcctttgaactctctctgcttgcaaattaaaagtttgcaggttgga
agtataggaaatttcttgtcttctgctctgcagccaccagaatcactggctgtacaaaac
gccattgattttctgaaaaagattgggtcactagatgagaacgaaaatctgacaaatctt
ggaaagtttctgtccattcttccagtggatccaaagcttgggaaaatgctaatcatgggt
gctatctttcgttgctttgatcctgttcttactatagtatctgggcttagtgtcagggat
cctttccttttgccccaagacaaaaaggatttagcagggacagcaaagtctagattttct
gcaaaagattacagtgatcatatggctctggttcgtgcgtatgaaggatggaaagatgca
gaaagagaaggatctgcatacgagtattgctggaggaatttcctctctgcccaaacactt
caggctatccattctcttcggaagcagtttagcttcattttgagagattctggcttggtg
gatgcagatgcaagcaataacaacagactaagtcacaaccagtcattggttcgtgcaatt
atatgttctggcctcttccctggcatagcatctgtagtgcacagagagacgtccatgtct
ttcaaaacgatggatgatggccaggttttactctatgcgaattctgtcaatgctcgttac
cagacaatttcttatccttggctagtctttggtgaaaaagtgaaggtgaatacagttttc
atacgtgattccactggcgtgtctgattcaatactgatcctttttggtggtgctctcagc
aaaggtgtacaggctgggcatttgaaaatgttacaagggtatgtcgactttttcatggat
cctaatttggcggaatgttactcgaagctcaaggaagaacttgataggcttgtacagaag
aagcttgaagatcctagccttgacatgcataaggaggggaagtaccttatgcttgcggta
caagagcttgtgtcaggggaccaatgtgaagggagatttgtatttggccgtgaaagcaag
aagcctaaggagtccaatgacagcaggttcacaaaagatggaacaaaccccaagagcttg
ctacaaacactgttgatgagagcagggcactctcctcctaaatacaaaaccaagcacctt
aagacaaacgagtttagggctctggtggagttcaagggaatgcaattcgtagggaaaccc
aagaaaaacaagcagcttgcagagagggatgctgctatagaggcattggcctggttgact
cacacttctgacaacagaagggacgaagacgataactctccgcccgatgtcactgacaac
atgttgaaacttcttggaaaacggaggagatcaaagcgccgataa
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