Corylus avellana (European hazelnut): 132181721
Help
Entry
132181721 CDS
T09426
Name
(RefSeq) DNA mismatch repair protein MSH3 isoform X1
KO
K08736
DNA mismatch repair protein MSH3
Organism
cave
Corylus avellana (European hazelnut)
Pathway
cave03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cave00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
132181721
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cave03400
]
132181721
DNA repair and recombination proteins [BR:
cave03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
132181721
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_II
MutS_IV
TPR_NUP120_160
Motif
Other DBs
NCBI-GeneID:
132181721
NCBI-ProteinID:
XP_059450943
LinkDB
All DBs
Position
ca5:23612388..23625260
Genome browser
AA seq
1118 aa
AA seq
DB search
MGKQKQQVISRFFASKPKTPPNPSPSPPPPPPSSTPPTPPPKISATVTFSPSKRLLSSQL
SSPNPKPPKLPKLSPHTHNPIPPLPNPSLHQKFLHKLLEPSPTPPEPSTHNPNPNPTKYT
PLEQQVVDLKNKYPDVLLMVEVGYKYRFFGEDAEIAARVLGIYGLLDHNFMTASVPTFRL
NVHVRRLVSAGYKVGVVKQTETAAIKAHGANRLGPFCRGLSALYTKATLEAAEDVGGGED
GCGGESNYLMCVVEKCVLEKNMECGLESQFDVRIGMVAVEISTGDVVYAEFNDNFMRSGL
EAVVLSLSPAELLLGEPLSRKTEKSLLGYPGPASNVRVEHASRECFKDGGALAEVMSLFE
VMSEDSLADHPKQNTEIAEQGLTIEGIMNMPDLAVQALALTIRHLKQFGFERILCLGGSF
RPFSSNTEMALSANALQQLEVLKNNSDGSESGSLLQSMNHTLTIFGSRLLRHWVTHPLCD
RNMISSRLDAVSEIAESMGSSRSSQNIGGSDGEDSDITIVQPEFNYLLSSVLTTLGRSPD
IQRGITRIFHRTATPSEFIAVIQAILYAGKQLQQLHIEEENNGKNMKAKTVRSELLRKLI
LAASSSSVIGNAAKLLSTLNKEAADQRDLQNLIIISNGEFPEGAKARKELQLAKEKLDSL
IDLYRKRLGMRKLEFMSVSGITHLIELPLDVKVPLNWVKVNSTKKTIRYHPPEVLTALDE
LSLANEKLTIACRAAWDSFLRGFSKYYAEFQAAVQALATLDCLHSLAILSRNKNYVCPVF
VYEDEPVQIYICSGRHPMALGFQNVLETTLQDNFVPNDTNLHADGEYCQIVTGPNMGGKS
CYIRQVALIAIMAQVGSFVPASSAKLHVLDGIYTRMGASDSIQQGRSTFLEELSEASHIL
HNCTARSLVIIDELGRGTSTHDGVAIAYATLHYLLEQKRCMVLFVTHYPKVADIKTEFPG
SVGAYHVSYLTSHKESEIKDSKSDHEDVTYLYKLVTGVCERSFGFKVAQLAQLPPTCISR
ATSMASRLEALVTCRAGRRSGKKLLLGEMLTDYEQKTKENILGIPECFRPGGTGELEDIS
IAYKEFFLNLEAAISDDAGSFQLLNARSIAKELTRRLR
NT seq
3357 nt
NT seq
+upstream
nt +downstream
nt
atgggcaagcaaaaacagcaagtgatatcccgcttctttgcttcaaaacctaaaaccccg
ccaaacccttccccttctcctcctcctcctcctccatcttcaaccccaccaacccctcct
cccaaaatctcagccacagtcactttctcaccctccaaacgcctcctttcctcccaactc
tcctccccgaatcccaaacccccaaaactccccaaactctctcctcacacccacaacccc
attccccctctccccaacccctccctccaccaaaaattcctgcacaaacttctagaacct
tccccaacccctccagaaccttccacacataacccaaatccaaacccgaccaaatacacc
cccttagaacaacaagtagtggacctgaagaacaaatacccagatgttcttttgatggtg
gaagttggttacaaataccgctttttcggcgaagatgctgaaattgccgccagggtgttg
gggatttatggccttttggatcacaattttatgacggccagcgtgccaacttttcgatta
aatgtccatgtgaggaggcttgtgagtgctgggtataaggttggtgtggtgaagcagacc
gagaccgcggccattaaggctcacggggcgaatcggttgggcccgttttgccggggttta
tcggctttgtacacgaaggcgacgctggaggcagccgaggatgtggggggaggagaggac
ggttgcgggggagagagtaattatttgatgtgtgtggtggagaagtgtgtcttggaaaag
aatatggagtgtggattggagagtcagtttgatgtgagaattgggatggttgcggtggag
atatctaccggggatgtggtttatgcggagttcaatgataattttatgaggagtgggctt
gaggctgtggttttgagcttgtcaccggccgagttgcttcttggggagcctctctctagg
aaaacagagaagtccttacttggttatcctggacctgcctcaaatgtccgtgtggagcat
gcctcgcgagagtgcttcaaagatggtggtgcacttgcggaagtgatgtctttatttgag
gtcatgagtgaagatagtttagcagatcatccaaaacaaaacacagagatcgcagagcag
gggttgacaattgagggaattatgaacatgccagatttggccgtccaagcattggcctta
accattcgtcatctaaaacaatttggttttgaaagaattttgtgcctaggaggttcattt
aggcccttttcaagcaacacggagatggccctctcagctaatgcacttcaacaattggag
gttttgaagaataacagtgatgggtctgagtctggctccttgctgcagtcgatgaatcat
actctgactatatttggttcaaggcttcttaggcactgggtaactcaccctttatgtgat
agaaacatgatttcttctcgccttgatgctgtttctgagattgcagagtcgatggggtct
tctagatcttctcaaaatattggagggtcagatggggaagattctgatataacaattgta
caacctgagtttaattatttgctttcttcggttttgaccacattgggaaggtcacctgat
attcaacgtggaataacaagaatcttccatcggactgccaccccatcagagttcattgca
gttattcaagctattttatatgctggaaaacaacttcagcaacttcatattgaagaagag
aacaatgggaaaaatatgaaagcaaagactgtgcgctctgaattgttgagaaagttgatt
ttggctgcttcatcatccagtgtaattggcaatgctgcgaaactgttgtctacccttaac
aaagaagcagctgatcaaagggatctacaaaatttaattatcatttctaacggcgaattt
cctgagggtgctaaagcccggaaagagcttcaactggcaaaggagaaattggattctttg
attgatttgtatcgcaagcggcttggaatgcgcaagttggaattcatgagtgtgtctgga
ataacacatttgatagagttgcccttagatgtaaaggtacctttgaattgggtcaaggta
aacagcaccaaaaaaacaatacgctatcacccacctgaagtattgactgctttagacgag
ttatccctggcaaatgagaagctaactattgcctgtcgtgctgcttgggatagctttcta
aggggattcagtaaatattatgccgagttccaagctgctgttcaagcattagctacattg
gattgtctgcactcacttgccattctttctagaaataagaactatgtttgcccagttttt
gtctatgaagatgaacctgttcagatatatatttgttctggtcgtcacccgatggcattg
ggattccaaaatgttttggaaactacattgcaagacaatttcgttccaaatgacacaaat
ttgcatgcagacggagagtattgtcagattgttactggacccaacatgggtggaaagagt
tgctacattcgccaagttgctctcattgctatcatggctcaggtcgggtcctttgtacct
gcatcatcagcaaaactccatgtgctagatggtatctacacccgaatgggtgcttctgac
agtatccaacaagggagaagcacctttctagaagagttaagtgaggcttcacatatactc
cacaattgcacagcacgttcgttggttatcattgatgaacttgggagaggcacaagtaca
cacgacggtgtagctattgcttatgctacattgcattatctactagagcaaaaaagatgc
atggtcctctttgtcacccactaccccaaagttgccgatattaaaactgaatttccaggc
tctgtcggggcctaccatgtttcatatttgacctcacataaagaatcggaaataaaggac
tcaaaatcagatcatgaagacgtcacttacctatataagcttgtcactggtgtttgtgag
agaagttttgggtttaaggttgcgcagcttgcacagctacctccaacgtgtattagtcga
gccacttccatggcttccaggttggaagctttggtaacatgcagggcaggaaggagatcg
gggaaaaaactgttgctaggggaaatgctgactgattatgaacagaaaaccaaagagaac
attttgggaattcctgagtgcttccgtccaggagggactggagaattagaagatataagt
attgcttacaaggaattctttttgaacttggaagctgcaatatctgatgatgcaggaagc
ttccagcttttaaatgcgaggagcattgcaaaggaattaacaagaaggttaagatga
DBGET
integrated database retrieval system
