Corylus avellana (European hazelnut): 132182566
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Entry
132182566 CDS
T09426
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
cave
Corylus avellana (European hazelnut)
Pathway
cave03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cave00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
132182566
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cave03019
]
132182566
03012 Translation factors [BR:
cave03012
]
132182566
Enzymes [BR:
cave01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
132182566
Messenger RNA biogenesis [BR:
cave03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
132182566
Translation factors [BR:
cave03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
132182566
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
nSTAND3
AAA_19
FoP_duplication
NACHT
T2SSE
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
132182566
NCBI-ProteinID:
XP_059451836
LinkDB
All DBs
Position
ca1:complement(49898969..49911000)
Genome browser
AA seq
1038 aa
AA seq
DB search
MSLRLFGANDCFYSYYLSKHLFLAQRLSAYSWRRISICAMSNRPNFQGGRRGGPNAGGRG
GGRRGGGGGGGGRGGGRGEQRWWDPVWRAERLRQKQAEMEVLDENEWWSKMEQMKRGGEQ
EIVIKRNYSRGDQQTLSDMAYQLGLYFHAYDKGKALVVSKVPLPDYRADLDERHGSTQKE
IRMSSDIEQRVGSLLNSSGSQGAVHVNDSSMIPIQGGKKSSAGSNIRKPDSLLDIDSAKE
KLSLELKQRQENMKASDSLKAMQSFREKLPAFKVRSEFLKAVAKNQVLVVSGETGCGKTT
QLPQFILEEEISSLRGADCFIMCTQPRRISAISVAARIASEKGESLGETVGYQIRLEAKR
SAQTRLLFCTTGVLLRQLVQDPELTGVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLR
LILMSATINADLFSKYFGNAPTIHIPGLTFPVAEFFLEDVLENSRYNIKSEFDNFEGNSR
RRRRQQDSKKDPLTELFEDIDIDSHYKNYSTSTRKSLEAWSGSQLDLGLVEATIEYICRH
EGDGAILVFLTGWDDISKLLDKVKGNNFLGNPSKFLVLPLHGSMPTINQREIFDRPPPNK
RKIVLATNIAESSITIDDVVYVIDSGKAKETSYDALNKLACLLPSWISKASAHQRRGRAG
RVQPGICYRLYPKMIHDAMLQYQLPEILRTPLQELCLNIKSLQLGTIGSFLAKALQPPDS
LAVQNAIELLKTIGALDDMEELTPLGRHLCTLPLDPNIGKMLLMGSIFQCLNPALTIATA
LAHRDPFVLPISRKEEADAAKRSFAGDSCSDHIALLKAFEGWKDAKRNGRERAFCWDSFL
SPVTLQLMDDMRMQFLDLLSDIGFVDKSRGANAYNQYSHDLEMVCAILCAGLYPNVVQCK
RSGKRTQFYTKEVGKVDIHPASVNAGVHLFPLPYMVYSEKVKTTGIYVRDSTNISDYALL
LFGGNLIPSKSGEGIEMLGGYLHFSASKSVLELIRKLRGELDRLLNRKIEEPGLDISVEG
KGVVAAVVELLHNHDARY
NT seq
3117 nt
NT seq
+upstream
nt +downstream
nt
atgtctctgcgcctgttcggcgcaaacgactgcttctactcctactacctctctaaacat
cttttccttgcgcagcgcctctctgcatattcttggcgtcgaatctcaatctgtgccatg
tctaaccggcccaacttccaaggcggacgccgcggcggccccaacgccggaggacgcggt
ggtggccgccgaggtggcggtggcggtggcggaggccgtggtgggggacgcggcgagcag
cggtggtgggacccggtctggcgagcggagcgcctgagacagaaacaagctgagatggaa
gttcttgacgagaacgagtggtggagtaagatggagcagatgaaaagaggaggggaacaa
gagatcgtaattaagcgtaattacagtcgtggggaccagcaaaccctatctgatatggct
tatcagctggggctttacttccatgcatatgataaagggaaggctcttgttgtcagcaaa
gttccactgccagattaccgggcagatctcgatgaacgccatggatccacacagaaagag
attcgaatgtcctcagatattgagcagagagttggcagtcttttgaatagctcagggtca
cagggggcagtgcatgtcaatgattcttctatgatacctattcagggaggcaaaaaatca
tcagccggtagtaatataagaaagcccgactccttgttggacattgattctgctaaggag
aaacttagtcttgaacttaagcaaaggcaggaaaacatgaaggcaagtgattctttaaag
gcaatgcagtcgtttagggaaaagcttcctgcattcaaagtgagatcagagtttctgaaa
gctgttgctaaaaaccaggtattggtagtttcgggggagacaggttgtggcaaaacaact
caactccctcagtttattctagaagaggaaatatcctctctgcgcggtgctgattgcttc
ataatgtgcactcaaccccgccgtatatcagctatatctgttgctgctcgtattgcttct
gaaaagggggagagtctcggtgaaactgttggttatcagatccgcctggaagcaaagcgc
tctgctcaaacacggttgctattttgtaccacgggagtattactccgacagttggtccag
gacccagagttaacgggggtgagccatctgctagtggatgaaatccatgaaagaggcatg
aatgaagactttttactaataattctgcgtgatcttcttcctcgccgtccagatttacgt
cttattctaatgagtgctaccatcaatgctgatttgttctccaaatattttggaaatgcc
ccaactatacatataccgggattgacttttcctgtggctgagttttttctagaggatgtg
ctggaaaatagtcgttataatatcaagtcggagtttgacaactttgaggggaattcaagg
agaagaaggagacagcaagactctaagaaagatcctttaacagaattatttgaggatatt
gatattgattctcactacaaaaattatagtacatctacgagaaagtctcttgaagcttgg
tctggttcacaacttgatttgggtctggtggaggcgacaattgaatatatatgtcgccat
gaaggtgatggagctattcttgtattccttacaggttgggatgacatttctaagctactt
gacaaagttaaaggaaacaacttccttggcaatcccagcaagtttctggtccttccccta
catggttcaatgcccaccatcaatcaacgtgagatatttgatcgtcctccccctaacaag
aggaaaattgtgctggcaacaaatattgcagagagtagtatcactatagatgatgttgtg
tatgtcatagacagtggaaaggcaaaggaaactagttatgatgccctgaacaaactggct
tgtctattaccatcgtggatttctaaggcttccgcacatcagagacgaggtcgtgctggc
cgtgtgcaacctggaatttgttatagactatatccaaaaatgatccacgatgcaatgctt
cagtatcagttacctgagattctcagaacacctttgcaagagctatgcctgaatatcaaa
agtttgcagcttggaactattggatcatttttggccaaagcacttcaacccccagattct
cttgccgttcaaaatgcaattgaacttcttaaaacaattggagctttagatgatatggag
gagcttactccccttggtcgccatctttgcactctaccattggacccaaatattgggaag
atgcttcttatggggtctatctttcaatgcctcaatcctgccttaacaattgccacagcc
cttgcacatcgtgacccttttgtcctaccaataagtaggaaagaggaagctgatgcagca
aaaagatcctttgctggtgattcttgcagtgaccacatagcacttctcaaagcctttgaa
ggatggaaggatgcaaaacgaaatggaagggaaagagcattctgttgggatagctttttg
tccccagtaaccttgcagttgatggacgatatgagaatgcaatttctagatctattatca
gacattggctttgtagacaaatcaaggggtgctaatgcgtacaaccaatacagccatgat
ttggagatggtctgtgcaatcctttgtgctggactctacccaaatgttgtgcagtgcaaa
agaagtggaaagcgaacacaattctacactaaagaggttgggaaagttgacatccatcct
gcttctgtcaatgcaggggttcatctcttccctctgccgtacatggtttacagtgaaaag
gtgaaaacaactggcatctacgtccgagactctacaaatatatcagactacgctctactt
ctatttggtggtaatctcatccctagcaaatccggggagggcattgagatgcttggtggt
taccttcatttctctgcatcaaagagcgttttagagctaatacggaaattgcgtggggaa
cttgataggcttctaaataggaagattgaggaaccggggttggacatttctgtggaggga
aaaggagtggttgctgctgtggttgagttattgcacaatcatgatgcacgttactaa
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