Corylus avellana (European hazelnut): 132183605
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Entry
132183605 CDS
T09426
Name
(RefSeq) uncharacterized protein LOC132183605
KO
K06100
symplekin
Organism
cave
Corylus avellana (European hazelnut)
Pathway
cave03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cave00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
132183605
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cave03021
]
132183605
03019 Messenger RNA biogenesis [BR:
cave03019
]
132183605
Transcription machinery [BR:
cave03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
132183605
Messenger RNA biogenesis [BR:
cave03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
132183605
U7-dependent histone pre-mRNA processing factors
132183605
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
Motif
Other DBs
NCBI-GeneID:
132183605
NCBI-ProteinID:
XP_059452942
LinkDB
All DBs
Position
ca6:24879990..24910776
Genome browser
AA seq
1336 aa
AA seq
DB search
MAGAPRDQALALLAAANNHGDLAVKMSSLKQARDILLSVEPSLAAELFPYLVELQSSPES
LVRKLLVEVVEEVGLKAMELSSVLLSVLVALVRDGDSIVAKQCIVSGTNFFCRVMEELAL
QFLRRGKVERWLEELWTWMVKFKDAVFAIALEPGSVGTKLLALKFLETYVLLFTSDTDEL
EKPVTEANRRAFNMSWLVGGHPVLDPVMLLSEANRTLANLLNLLPLTNGLPGSLTITVIN
CLAAIARKRPVHYSTVFSALLDFDLNFETVKGCHAASIQYSLRTAFLGFLRCTYPAIIES
RDRLLRALRAMNAGDAADQVIRQVDKIIKNSERASRDARLGKDDQLSSQLPVSSDLLKKR
SLPFDNEELANGHEVGSKRIRYGSDQLALPVQVNDAGQDSSLLNGVSPVLHGQLTPVEQM
IAMIGALLAEGERGAESLEILISKIHPDLLADIVITNMKHLPKTLPPLTRLGNSPVTRQI
GSVTSPAQVVSISAPTNFEESPDVSAQAPLSSTNATSSSLSDTPPINNLPADSKRDLRRD
PRRLDPRRVVAPVGAPSIPVVEDIGAVQSELDPSISMSKPISLPVTTSLENPSTSLMPKI
KSEDKILGSPLVSGTDQLTPNKEVLDKTEEIDPITEDTPSDPAPSPVNKVDEDSVALKLS
DVVVANGADKLSFLESDQNSPTVSNASASEDTCQDLPLLPSYVELTQEQERSVRNLAIEQ
IIESYKHSCGTECSHMCMALLARLVAQIGTDDDVVTMLKNHVVMQYQWQKGHELVLHVLY
HLHTLIILDSAENSSVAAVVYEKLLLAVAKSLLDSFPASDKSFSRLFGEVPLLPDSALKL
LYELCYADITDHLGKDVRDVERVTQGLGAVWILILGRPLNRRACLDIALKCAVHPQDEIR
ARAIRLVANKLYQLSYISETIEQYATNMLVAAVDQHIPDIELSQSLSTEHRVQGEVESQE
TSTSGSQVSEPRTSENEFSRSAQSLVRNTSMSLAEAQRLISLFFALCTKKPSLLQLVFNN
YCQAPKSLKQAFHRHIPILVRSLGSSCSELLHIISDPPQGSENLLTLVLEILTQDTTPSS
DLLATVKHLYETKLKDVTILIPMLSSLSKNEVLPIFPRLVDLPLEKFQMALAHILQGSAH
MGPALTPVEVLVAIHHIVPEKDGLALKKITDACSACFEQRTVFTQQVLAKALNQMVDETP
LPLLFMRTVIQAIDAFPTLVDFVMEILSKLVNRQVWRMPKLWVGFLKCVSQTQPHSFDVL
LQLPAPQLESSLNKHSKLRGPLASYARQPSVRTSVPRSTLAVLGLANETNLQLPHVSSSL
HSADSTSSSVQGATPT
NT seq
4011 nt
NT seq
+upstream
nt +downstream
nt
atggccggagctcccagagaccaggcgctcgctctcctcgccgccgccaacaaccacggc
gacttggcggttaagatgtcttctttgaagcaggcgagagacattctattgtccgtagag
ccgtccttggcagccgagcttttcccttacttggtcgagctccagtcctctcccgaaagc
ctcgtccgcaaactgctcgtggaggtggttgaagaggttgggttgaaagcaatggaactt
tcttcggtgcttttgtctgtgttagtggcacttgtaagagatggcgactccattgttgcg
aagcaatgtattgttagtggcacgaatttcttttgccgtgttatggaggagttggcattg
cagtttctccggcgtggtaaagttgagaggtggcttgaagagctttggacgtggatggtt
aagttcaaagacgcggtctttgccattgcattggagcctggctctgtcgggacaaagttg
ctggctttgaaatttttggaaacgtatgttttactttttacgtctgacactgatgagttg
gaaaagcctgtcacagaagcaaataggcgggcttttaatatgtcgtggctggttggtggt
caccctgttctggacccagttatgcttttgtcagaagcaaacagaactcttgccaatcta
ctaaatttgttgcctttgaccaatggcctccctggttcattgacaataactgttattaac
tgtcttgcagccatagcaaggaagaggccagtccactatagtacagttttttctgctctg
cttgattttgatctaaactttgagacggtcaaaggatgtcatgctgccagtatccagtat
tccttaagaactgcatttttgggattcctgaggtgtacttatccagccatcatagagtcg
agagatagattgcttagggccctccgggctatgaatgctggggatgctgctgatcaggtt
atcaggcaagttgataaaataattaaaaatagtgagcgtgcttcacgtgatgctcgcttg
ggcaaggatgatcaattatcaagccagctgcctgtatcaagtgatctgttaaaaaaaagg
tctttgcctttcgataatgaagagctagctaatggtcatgaggtgggttccaagcggatc
cgttatggttctgaccagttggctttgccagttcaagtaaatgatgctgggcaggattct
tctcttcttaatggagtatctcccgtactgcatggtcaattgactcctgtggaacaaatg
attgccatgataggtgctttgcttgctgaaggtgaaagaggtgctgaatcacttgaaatc
cttatttcaaaaatccatcctgacctgctggctgatattgtcataacaaatatgaagcac
ttgcctaagacgcttccacctttaacaaggcttgggaactcgccagtaacccggcaaata
ggttctgtaactagcccagcccaggttgtttcaatctctgctccaaccaattttgaggaa
tctccggatgtcagtgcacaagcacctctttcttcaactaatgcaactagttcatcattg
tctgatacacctccgatcaataatctccctgctgattctaaacgtgatctgcgcagggat
ccccgtcggctggatccacggcgtgtagtagccccagttggggcaccttctattcctgtt
gtggaggacattggagctgtgcaatctgagttggaccctagtatttctatgagtaaacct
atttcacttcctgttacaaccagtcttgaaaatccttctacatctctcatgcccaagatc
aaaagtgaagataagattttgggaagtccattggtttctggcactgatcagctaactccc
aacaaggaggttctggataaaaccgaggaaattgacccaatcacagaggatactccttca
gatcctgcaccttcccctgttaacaaagttgatgaggactcggttgcattgaagttgtcg
gatgttgtagtggcaaatggggctgataaattgtcttttctagaatctgatcagaattct
ccaactgtttcaaacgcatctgcatctgaagatacctgtcaggatttacctctgcttcca
tcatatgtagagctgacccaagaacaagaaagaagtgtgagaaatttggcgattgaacaa
attattgaatcatacaagcattcatgtgggactgagtgtagccacatgtgtatggcatta
cttgctcgattggttgctcagataggtaccgatgacgatgttgttacaatgctgaaaaat
catgttgtcatgcaatatcaatggcaaaaggggcatgagcttgtattacatgtcttgtat
catctgcacactctcatcatcttggattctgcggagaactcttcggttgctgctgttgtt
tatgaaaagctcctcttggcagtggccaaatctttgctggactcttttccagcttcagac
aagtcttttagtagactttttggtgaagtcccacttttgcctgactcagccttgaaacta
ttatatgaactctgctatgctgatattactgatcaccttgggaaagatgtacgtgatgtt
gagcgtgttactcagggccttggtgctgtctggattttgattttgggacgcccacttaat
cggcgagcctgcttggatatagctttgaagtgtgctgttcatcctcaagatgagatccga
gccagagcaatccggctggtggcaaacaaactctatcagcttagctacatatccgaaact
attgagcaatatgcaacaaatatgttggtggctgctgtagatcagcatattccagatata
gaactttcacagtctctgtccaccgagcatagagtccaaggggaggttgaaagccaggaa
acatccactagtggttctcaggtttcagagcccaggacttctgagaatgagttcagtagg
agtgcacaatcattagtgcggaacacttctatgtcattagctgaagctcaacgactcatt
tctttgttttttgctttatgtacaaagaaacccagtcttcttcaacttgtatttaataat
tactgccaagccccaaaatctctaaagcaggcttttcatcgtcatatccccattcttgta
aggtccctagggtcatcttgttctgaattgctccatataatatctgatccaccccaagga
agtgaaaatcttttgacactggtgttggaaatattgactcaagatacaacgccttcttct
gatctgctagccactgttaaacatttatatgaaactaaattaaaggatgtcacaattctt
attccaatgttgtcatcactttccaaaaatgaggtgttacctattttccctcggcttgtt
gaccttccattagaaaagttccagatggcgcttgctcacatactacagggttcagctcat
atgggtccagctttaacacctgtggaagtgttggtcgccatccatcacattgttcctgag
aaagatggccttgcacttaagaagataacagatgcttgttcagcctgttttgagcaacgg
acagttttcacgcagcaggtcttggcaaaggcattgaaccagatggttgatgaaactcct
ctacctctactcttcatgagaacagtgattcaggcaattgatgcttttcctacactggtt
gatttcgtgatggagattctttccaaacttgtgaacagacaggtgtggagaatgcctaag
ctgtgggtaggatttttgaaatgtgtgtctcagacgcagccacattcttttgatgtgctg
ttacagttgccagcaccacaacttgaaagctctctgaataaacactctaaacttagaggt
ccccttgcttcctatgcaaggcagccaagtgttagaacctcagtacctagatcgacacta
gcagttcttggtcttgcaaacgaaacgaatttgcaactacctcatgtctcatcatctttg
cactctgctgacagcacaagttcttcagttcaaggagcaactccaacgtga
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