Corylus avellana (European hazelnut): 132183800
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Entry
132183800 CDS
T09426
Name
(RefSeq) putative transcription elongation factor SPT5 homolog 1
KO
K15172
transcription elongation factor SPT5
Organism
cave
Corylus avellana (European hazelnut)
Pathway
cave03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
cave00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
132183800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cave03021
]
132183800
03019 Messenger RNA biogenesis [BR:
cave03019
]
132183800
Transcription machinery [BR:
cave03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
132183800
RNA polymerase I system
132183800
Messenger RNA biogenesis [BR:
cave03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
132183800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW1_SPT5
KOW6_SPT51-2
KOW4_SPT5
KOW2_Spt5
Spt5-NGN
KOW
KOW7_SPT5
KOW5_SPT5
KOWx_SPT5
Spt5_N
GPKOW_C
ProQ_C
DUF4438
Motif
Other DBs
NCBI-GeneID:
132183800
NCBI-ProteinID:
XP_059453212
LinkDB
All DBs
Position
ca6:2923883..2934933
Genome browser
AA seq
1042 aa
AA seq
DB search
MPRRRGDEEDEDLEPEEDQEQAYDEEEEEEEEEEEERGMASRKRRRSNFIDDLAEEDDEE
EEEEDDDDDDYGGGGGGRKHRPKRRLGSQFLDIEAQVDSDEDEEEEDAEDDFIVDGGADL
PDDDVGRRIHRRPLLPREDEQEDVEALERRIQARYSRSAQPELDDETTDVEQQALLPSVR
DPKLWMVKCAIGREREAVVCLMQKYIDKGPELQIRSAVALDHLKNYIYVEADKEAHVKEA
CKGLRSIFSQKVMLVPIREMTDVLSVESKAIDLSRDTWVRMKIGTYKGDLAKVVDVDNVR
QRVTVKLIPRIDLQALANKLEGREVVKKKAFVPPPRFMNVDEARELHIRVERRRDPMTGD
YFENIGGMLFKDGFLYKTVSMKSISSQNIKPTFDELEKFRQPGENGDSDMASLSTLFANR
KKGHFLKGDAVIVVKGDLKNLKGWVEKVEEENVHIRPEMKDLPATLAVNEKELCKYFEPG
NHVKVVSGTQEGATGMVVKVEQHVLIILSDTTKEHIRVFADDVVESSEVTSGVTRIGDYE
LHDLVLLDNLSFGVVIRVESEAFQVLKGVPDRPEIALVKLREIKCKIDKKISVQDRYKNT
VSAKDVVRIIEGPCKGKQGPVEHIYRGVLFIYDRHHLEHAGFICAKAHCCIIVGGSRANG
DRNGDSYSRLANLKTPPRIPQSPKRFSRGGPPIDSGGRHRGGRGHDGLVGTTVKIRLGPY
KGYRGRVIEVKGATVRVELESQMKVVTVDRNSISDNVVVSTPYRDAPRYGIGSETPMHPS
RTPLHPYMTPMRDPGATPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQYQ
AGSPPSRAYEAPTPGSGWANTPGGNYSEAGTPRDSSSAYANAPSPYLPSTPGGQPMTPNS
VSYLPGTPGGQPMTPGTGGLDAMSPVIGGDSEGPYFVPDILVNVRRSGEESVVGIVREVL
PDGSCRVVLGSSGNGDTITALPNEMEIVGPRKNDKIKIMAGVLRGATGKLIGVDGSDGIV
KVDDTLDVKILDLVLLAKLAQP
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atgccgcgacgtcgaggagacgaggaggacgaggacctggagcccgaggaggaccaggag
caggcctacgatgaagaagaggaggaggaggaggaggaagaggaagagagaggaatggca
agccggaagcggcggcgatcgaacttcatcgatgacttggcggaggaggacgacgaggag
gaggaagaggaggacgacgacgatgatgattacggtggcggaggcgggggcaggaagcac
cggcctaagaggcgcctcgggtcccagttcttggatatcgaggcgcaggtggacagtgat
gaggatgaggaagaggaggatgctgaggacgattttattgttgatggtggagcggatctg
cctgatgacgatgttggtagaaggattcatcgtcgcccactgctgccgcgagaggatgaa
caagaagatgttgaagctctggagaggaggattcaggctagatattcaaggagtgctcag
ccagaacttgatgacgagaccacggatgtggagcagcaagctcttttgccgtctgttagg
gatccaaagttatggatggtcaaatgtgcgattggtcgcgagcgagaagcggtcgtctgc
ctaatgcagaagtatattgataaaggacctgagttacaaatcaggtcggctgttgcactt
gatcatcttaaaaactacatatacgttgaagcagacaaagaagcccatgtgaaggaggct
tgcaaaggactacgcagtatattctcacagaaagtaatgcttgtccctattagagaaatg
actgatgttctttcagttgaaagcaaagcaattgacctttctagggacacttgggtcaga
atgaagattgggacttataaaggggaccttgcaaaggtggtggatgtagataatgtgagg
cagagggttacagtgaaattaattccaagaattgacttacaggctcttgcaaacaaattg
gagggtagagaagttgtgaagaagaaagcatttgttcctcctccacgttttatgaatgtt
gatgaagctagagaactgcacattcgtgtagagcgcagacgagatccaatgaccggcgat
tactttgagaatattggtggcatgttgtttaaagatggtttcttgtacaaaacagtatca
atgaaatcaattagctctcagaatataaaacctacttttgatgaacttgaaaaatttcgg
caacctggtgagaatggagatagcgatatggccagtttgtctacattatttgcgaataga
aagaaagggcattttttgaagggcgatgcagtaattgttgtgaagggagacctcaaaaac
ttgaaaggatgggttgagaaagttgaggaagagaatgttcacatcagaccagaaatgaag
gaccttcctgcaactcttgctgtaaatgaaaaagagctttgcaagtactttgagcctggg
aatcatgtgaaggttgtgtctggtacacaggaaggtgcaactggtatggttgttaaggtc
gagcagcatgtgctcataatattatctgatacaaccaaagaacatatccgtgtatttgct
gatgatgtcgtggagagctccgaggtaacttctggcgttaccagaattggagattatgag
cttcatgatcttgtgctactggataatttgagttttggtgtagttattcgagtagaaagt
gaagcatttcaggttctcaagggagttcctgacagacctgagattgctctcgttaagttg
agagaaatcaaatgcaagattgacaagaaaatcagtgtgcaagatcggtataagaacacg
gtgtcagcaaaagacgttgtgaggatcattgagggtccgtgcaaggggaaacaaggccct
gtagaacatatatacagaggagtcttgttcatctatgatcgccatcaccttgagcatgca
ggctttatttgtgctaaagcccattgttgcattattgtgggaggatcgcgtgccaatggt
gatagaaatggtgattcgtactcaagacttgccaatcttaaaactccacctcgtattccg
cagtctccgaagagattttctcgaggaggccctccaattgactctggtggaaggcataga
ggtggaagggggcatgatggcttagttggtaccacagttaaaatccgcctcggtccctac
aaaggttatcgtggacgtgttattgaagttaaaggcgcaacagttcgtgttgagctagag
tcacagatgaaggttgttacagttgatcgcaattctatttctgataacgtggttgtttct
accccatatcgtgatgcgcctcggtatggtattgggagtgagactcccatgcatccttct
cgaactccgcttcatccatatatgacgcctatgagagatcccggagcaacacccattcat
gatggcatgaggacacctatgcgtgatcgagcgtggaatccttatacaccaatgagtcca
ccaagggataattgggaagatggaaaccctggctcttggggaaccagcccacagtatcag
gcaggaagtcctccttcccgtgcttatgaagctccaactcctggttctggttgggcaaat
actcccggtggcaattatagtgaagctggaacgccaagggatagtagttctgcctatgcc
aatgctcctagcccttacttgccttcaactcccggtggacagcccatgacaccaaattct
gtttcctatcttcctggcactcctggagggcagcccatgacgccaggaactggtggtctg
gatgctatgtctcctgttataggtggggacagtgaaggaccatatttcgtgccagacata
ttggttaatgtgcgcaggtctggagaggaatctgttgtcggaattgttcgggaggtgctt
ccggatggttcctgtcgggtagttcttgggtcaagtgggaatggtgacacaattacagcc
cttcctaatgagatggagatcgtgggaccaaggaaaaatgacaagatcaagatcatggca
ggtgtgctacgtggtgccactggcaagttgattggtgtggacggcagtgatggaattgta
aaggtagatgacactcttgatgttaagattttggacttggttcttttggcaaaattagca
caaccatga
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integrated database retrieval system
