Corylus avellana (European hazelnut): 132183835
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Entry
132183835 CDS
T09426
Name
(RefSeq) DNA mismatch repair protein MSH2
KO
K08735
DNA mismatch repair protein MSH2
Organism
cave
Corylus avellana (European hazelnut)
Pathway
cave03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cave00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
132183835
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cave03400
]
132183835
DNA repair and recombination proteins [BR:
cave03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
132183835
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
Motif
Other DBs
NCBI-GeneID:
132183835
NCBI-ProteinID:
XP_059453269
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Position
ca6:17467879..17486485
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AA seq
942 aa
AA seq
DB search
MEDNFEEQNKLPELKLDAKQAQGFLSFFKAIPHDPRAVRFFDRRDYYTAHGENATFIAKT
YYHTTTSLRQLGSGSDALSSVTISKNMFETITRDLLLERTDHTLELYEGSGSNWRLVKSG
TPGNLGSFEDVLFANNEMQDSPVVVALSPNFRENGCTVGLGYIDLTKRVLGLAEFLDDSQ
FTNVESALVALGCKECLLPVESVKSSESRTLHDALTRCGVMLTERKKTEFKARDLVEDLG
RLVKGSKEPVRDLISVFEFAPGALGALLSYAELLVDDSNYGNYTICRYNLDSYMRLDFAA
MRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVKEINSRLDLVQAF
VEDAALCQDLRQHLKRISDVERLMHNLEKKRAGLQHIVKLYQTSIRLPYIKSALEHYEGQ
FSSLIKDRYLDPLECWTDDDHLNKFIGLVEASVDLDQLENGEYMISSSYDSALSALKDEQ
ESLERQIHNLHQQTANELDLPLDKALKLDRGTQFGHVFRITKKEEPKIRKKLTTQFIVLE
TRKDGVKFTNTKLKKLGDQYQKKLEEYKNCQKELVDRVVQTAATFSEVFGSLAGLLSELD
VLLSFADLASSCPTPYTRPVITPSDEGDIILEGSRHPCVEAQDWVNFIPNDCKLVRGKSW
FQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDKASISVRDCIFARVGAGDCQLRGVS
TFMQEMLETASILKGATDKSLIIIDELGRGTSTYDGFGLAWAICEHLVEVIKAPTLFATH
FHELTALAHESPDHEPHKKQTVGVANYHVSAHIDSSSRKLTMLYKVEPGACDQSFGIHVA
EFANFPESVVALAREKAAELEDFSPTAIISNDAQEEVGSKRKRECDPDEMSRGAARAHQF
LKEFSDLPLDKMDLTQALQQVNKLKEDLQKDAVNCHWLQQFF
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atggaagacaattttgaggagcagaacaagcttcctgagttgaaactagatgcaaagcag
gctcaggggtttctctcattcttcaaggcgataccccatgacccaagggctgtacggttc
tttgatcgcagggactactatactgctcatggtgaaaatgcaacttttattgcaaagacc
tactatcatactactacttctttgcgacaattgggtagtggatctgatgccctttcaagt
gtaactattagtaaaaacatgttcgaaacaattacccgcgatcttctcttggagagaaca
gaccatactcttgagctctatgagggtagtggttcaaattggagactggtgaaaagtgga
actcctggaaatcttggcagttttgaagatgttctatttgccaacaatgagatgcaggat
tcccctgttgttgttgcactatcacccaacttccgtgaaaatgggtgcactgttggatta
ggttacattgatctaactaagagagtacttgggttggctgaatttcttgacgatagccaa
tttacaaatgtggagtcagctttagttgctcttggttgtaaggaatgccttctacctgtt
gagagtgtcaaatccagtgaaagtagaaccttgcatgatgctttgactagatgtggtgtg
atgttaactgagagaaagaaaactgagttcaaagcaagggacttagtggaggatcttggt
aggcttgttaaaggttctaaagaaccggttcgagacttaatttctgtgtttgagtttgca
cctggtgccttgggggcattactgtcttatgctgaattacttgtagatgatagcaattat
ggaaattatacaatctgcaggtataatctcgacagctatatgaggttagattttgctgct
atgagggcactgaatgtcctggaaagcaagacagatgccaacaaaaacttcagtttgttt
ggtctcatgaatagaacttgtactgctggaatgggaaaacggttgttgcacatgtggctg
aagcagcctttattagatgtaaaggaaatcaactccaggttggatttggtacaagcattt
gtggaggatgctgcactttgtcaagatctgaggcagcacctgaaaagaatatcagacgtt
gagcgactgatgcacaatcttgagaagaaaagagccggtttgcagcatattgtaaaactt
tatcagacaagtataagacttccctacattaaaagtgccctggaacattatgagggacaa
ttttcctcactgatcaaggacaggtatttggatcccctagagtgctggactgatgatgat
cacctgaataagttcattggccttgtagaagcttctgttgaccttgatcaacttgagaat
ggggaatacatgatttcttccagttatgattctgcactctctgcactgaaagatgaacaa
gagtcactggagcgccaaatacacaatttacatcaacaaactgctaatgaacttgatctg
cccctagataaggcgttaaagttagataggggcacacagtttggacatgtttttagaatc
acaaagaaagaggagccaaaaataaggaaaaagctcactactcaatttattgtccttgaa
acccgaaaggacggagttaaatttaccaatacaaagcttaaaaaattaggtgaccagtat
caaaagaaacttgaggagtataagaattgtcagaaagagctggtcgaccgagtagttcaa
actgcagcaacattctctgaggtttttggttctttagctggattgctttctgagttggat
gtcttacttagttttgctgatctggcttctagctgtcctactccctacacaagaccagtc
atcaccccttcggatgaaggagatattatcttggaagggagcagacatccttgtgtggag
gctcaagactgggtgaattttataccaaatgattgtaaacttgtcagggggaaaagttgg
ttccaaatcattactgggcctaacatgggtggaaaatccacatttattcggcaggttggt
gtgaatattctgatggcacaagttggttcttttgttccatgtgacaaagctagcatttct
gtacgtgattgcatttttgctcgtgtgggtgctggtgactgccaattacgtggagtttct
acctttatgcaagaaatgcttgaaactgcatcaatattgaaaggagctacagataagtca
ttgataatcattgacgagttgggccgcgggacatcaacttacgatggatttggtttagct
tgggccatctgtgagcatcttgttgaagtgatcaaagcccctactttatttgcaacccac
tttcatgaactgactgcattagctcatgaaagtcctgatcatgaaccccataagaagcaa
actgttggtgtggcaaactaccatgttagtgcacacattgactcgtcaagtcgcaaattg
actatgctttataaggttgagccaggggcttgtgatcaaagtttcggtatccatgttgca
gaatttgcaaactttcctgaaagcgttgttgcccttgctagagaaaaggctgctgaattg
gaagatttctcacctactgcaatcatttccaatgatgctcaagaagaggtaggatccaaa
cgaaagagagagtgtgatcctgatgagatgtctagaggtgctgcccgggctcaccagttt
ttgaaggagttctctgatctcccgctagacaaaatggatttgacgcaggctctgcaacaa
gtaaacaaattgaaggaggacttgcagaaggatgcagtaaactgtcactggctccagcag
ttcttctag
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