Corylus avellana (European hazelnut): 132183871
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Entry
132183871 CDS
T09426
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
cave
Corylus avellana (European hazelnut)
Pathway
cave03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cave00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
132183871
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cave03019
]
132183871
03012 Translation factors [BR:
cave03012
]
132183871
Enzymes [BR:
cave01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
132183871
Messenger RNA biogenesis [BR:
cave03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
132183871
Translation factors [BR:
cave03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
132183871
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
nSTAND3
T2SSE
AAA_19
ATPase
AAA_16
Dicer_dimer
Myosin_head
PhoH
Motif
Other DBs
NCBI-GeneID:
132183871
NCBI-ProteinID:
XP_059453314
LinkDB
All DBs
Position
ca6:complement(21453429..21478224)
Genome browser
AA seq
1201 aa
AA seq
DB search
MPYSAIFQGYIRITSTPLLSMSLRPTATTYFRVPKSLRPSLLPFFTRNRPPGLRNSHVRP
YSRPRVTCSAVEVDRRVRQRRVARPLWDQQSSGYGRFAYQDVSSDESDSELGPAKQQSQC
ASTLDNIDGWRWKLTMLLRNKDEQEVASRERKDRRDFEQLSVLATRMGLHSHQYAKVVVF
SKVPLPNYRPDLDDRRPQREVILPLGLQREVDAHLKAYLSQKSMRTGSFSDNSFSRSSSA
GSVVTDEGLYEQQEPLKQNSVAMEKILRQRSLQLRNKQQDWQESPEGQKMLEFRRSLPAF
KARDALLKAISENQVIVVSGETGCGKTTQLPQYILESEIEAVRGAVCSIICTQPRRISAM
SVSERVAAERGEKLGESVGYKVRLEGVKGRDTRLLFCTTGILLRRLLLDRNLKGVTHVIV
DEIHERGMNEDFLLIVLKDLLPRRPELRLILMSATLNAELFSSYFGGAPTMHIPGFTYPV
RAHFLENIIEMTGYRLTTYNQIDDYGQEKGWKMQKQAQALRKRKSQIASSVEDALEDADF
KEYSLRTQDSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQTH
PLLGDPSRVLLLACHGSMASSEQRLIFDKPQDGVRKIVLATNMAETSITINDVVYVVDCG
KAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECYHLYPRCVFDAFADYQLPE
LLRTPLQSLCLQIKSLQLGSISQFLSRALQPPEPLSVQNAVEYLNIIGALDENENLTVLG
RNLSTLPVEPKLGKMLIFGALFNCLDPIMTVVAGLSARDPFLMPFDKKDLAESAKAQFSA
RDYSDHLALVRAYEGWKDAERHQSGYEYCWRNFLSAQTLKAIDSLRKQFFCLLKDSGLVD
QNTENCNRWSHDEHLVRAVICAGLYPGICSVVNKEKSIALKTMEDGQVLLYSNSVNAGIP
KIPYPWLVFNEKVKVNSVFLRDSTGVSDSVLLLFGGNISRGGLDGHLKMLGGYLEFFMKP
ALAEMYLSLKRGLEDLMQRKILDPKLDVQSENELLSAVRLLVSEDQCNGRFVFNRQVAAP
SKKTTKEPLPGNLLSGGGGDNSKNQLQALLARAGHEAPTYKTRQLRNNQFRSTVMFNGLN
FDGQPCSNKKLAEKDAAAEALLWLKGESQSTPADIDHMSMLLKKSKKKDRKRSSTRSAKW
G
NT seq
3606 nt
NT seq
+upstream
nt +downstream
nt
atgccgtactcggccattttccagggctacatcagaatcacctcaacccctttactttcc
atgtctctcagacccaccgccacaacctactttagagtccccaaatccctaagaccttca
cttttacctttctttacgaggaaccgaccgccggggcttcggaactcgcacgtgcggccc
tactcgagaccgcgggtcacatgctcggcggtcgaggtggaccggagggtgaggcagagg
agggtcgctaggccgctttgggaccagcagagctcgggttatggccggttcgcgtaccag
gacgtctcgagtgacgagtctgatagtgagttggggcccgctaagcagcaatctcagtgt
gcttcgacccttgataacattgatgggtggagatggaagttaacaatgctgcttcgcaac
aaagacgagcaagaagtggcgtcaagggagagaaaagataggcgtgattttgagcaactc
tcagtgctggcaaccagaatgggtttacatagccatcaatatgcaaaagttgtcgtcttt
agtaaagttcctctgccaaattatagacctgacctggatgataggcgtccacagagagag
gtgattttacctttaggattgcaaagagaagtagatgctcatctcaaggcttatctttct
caaaaatctatgcgcactggaagtttctcagataattccttttcaagatcaagcagtgct
ggaagtgttgttactgatgaggggctttacgagcagcaggagcccttgaaacagaatagt
gttgccatggagaaaatcctccgacagagaagtttgcaattgcgaaataagcaacaggat
tggcaggaatctcctgaaggtcaaaagatgcttgaatttcgtagaagtctccctgcattc
aaagcgagagatgcattattaaaagccatttctgaaaatcaggtcattgttgtctcaggt
gaaactggctgtggtaaaactacacaacttcctcaatacatcttggaatctgaaattgaa
gctgttcgtggagctgtctgtagtattatatgtactcagcctagacgaatatctgcgatg
tctgtttctgaaagagttgctgcagaacgaggggagaaactgggagaatctgttggttac
aaagttcggcttgagggagtgaaaggaagggacactcgccttcttttttgcaccactggt
atattgttgaggagattacttttggatagaaatttgaaaggggtaactcacgttattgtt
gatgagatacacgaacgtggaatgaatgaagattttcttcttattgtcctcaaagatctc
cttcctcgtagaccagagttgaggttaattttgatgagtgcaaccctcaatgcggagctt
ttctcttcctactttggtggtgctccaacaatgcatatccctggttttacatatccagta
cgtgcacattttctggagaatattattgaaatgacaggatatcggttgactacatataat
caaattgatgattatggtcaagaaaaggggtggaaaatgcagaaacaagctcaagcttta
aggaagaggaagagccagattgcttcttctgttgaggatgcacttgaagatgctgacttt
aaggagtatagcttacggactcaggactctttatcctgttggaatcctgactcaattggt
tttaacctcattgagcatgtgctctgccacatagtcaagaaagaaaggcctggtgctgta
ttggtttttatgactggttgggatgacataaattcgttgaaggaccagctccaaactcat
cctctcttgggtgatccgagcagggtgttgctgcttgcatgccatggttccatggccagc
tctgagcagaggttaatttttgataagcctcaagatggagtgaggaaaatagttctagct
acaaacatggctgagactagtattaccatcaatgatgtcgtttatgtggttgattgtgga
aaggcaaaagagacatcatatgatgcactaaataacactccatgtttgttgccatcctgg
atatcaaaggctgctgctcgacaaaggaggggaagagctggccgagttcagcctggcgag
tgttaccatctctatcccagatgtgtattcgatgcttttgctgattatcaattgccagaa
ctcctaaggacaccattacagtcgttatgtttacaaatcaaaagtttacaacttggaagt
atttcacaattcttatctagggcattgcagccaccggaacctctatcggttcaaaatgct
gtggaatacttgaacatcattggggctttggacgagaatgaaaatctgactgtgctagga
cgcaacttgtcaacgcttccagttgagccaaagcttgggaaaatgctcatatttggggct
cttttcaactgcctagatccaattatgaccgttgttgctggccttagtgccagagatccc
ttcctgatgccattcgacaagaaggatcttgcagagtcagcaaaagcgcaattctctgcc
cgtgactacagtgaccatcttgcacttgtccgagcttatgagggttggaaagatgctgaa
agacatcaatctggttacgagtattgttggagaaatttcctttctgctcaaactctgaaa
gccattgactctcttcggaagcagttcttttgtttgcttaaggatagtggtctagttgat
cagaacaccgaaaactgcaatagatggagccatgatgagcatcttgtccgagcagtcatc
tgtgcaggcttgtaccctggaatatgttctgttgtgaataaagagaagtcaatagcatta
aaaacaatggaggatgggcaagtacttttgtactcgaattctgtgaatgctggaataccc
aaaattccatatccatggctagttttcaatgaaaaggtgaaagttaattcagtatttctt
cgggattcaactggtgtctctgattccgtgctgctcttatttggtgggaacatttcaagg
ggtggtctagatggacacctgaaaatgctgggaggatacttggaatttttcatgaaacct
gctttagcagagatgtatttaagcttaaagagaggacttgaggatctgatgcagaggaaa
attttggatcctaagttggatgtacaatcagagaatgagctcctgtcggctgtaagattg
ctggtatcggaggaccagtgtaatggtagatttgtcttcaatcgccaagtagcagcaccc
tcaaagaagactacaaaagagccactaccaggcaacctcttgagtggtggaggtggtgat
aattcaaagaatcagctacaggcactgcttgccagggcaggacatgaagcacccacctac
aagacaaggcagctgagaaacaaccagttccgttccactgtgatgtttaatgggttgaat
tttgacgggcaaccttgcagcaataagaaactcgcagaaaaggatgccgctgctgaggct
ctgctgtggttgaagggtgagagccaatcaactcccgcagatattgaccatatgtctatg
cttctaaagaagagcaaaaagaaagatcggaaaagatcctcaacccgcagtgctaagtgg
ggttaa
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