Corylus avellana (European hazelnut): 132184062
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Entry
132184062 CDS
T09426
Name
(RefSeq) polyadenylate-binding protein 3
KO
K13126
polyadenylate-binding protein
Organism
cave
Corylus avellana (European hazelnut)
Pathway
cave03015
mRNA surveillance pathway
cave03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cave00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
132184062
09123 Folding, sorting and degradation
03018 RNA degradation
132184062
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cave03019
]
132184062
03041 Spliceosome [BR:
cave03041
]
132184062
Messenger RNA biogenesis [BR:
cave03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
132184062
mRNA cycle factors
Stress granule specific factors
132184062
Spliceosome [BR:
cave03041
]
Complex C
Other components
Complex C specific factors
132184062
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_5
RRM_occluded
RRM_7
RRM_RdRP1_2
RBD_DEAH11
RRM_3
PABC_AtC3H46
RRM_YTH1
DUF848
Motif
Other DBs
NCBI-GeneID:
132184062
NCBI-ProteinID:
XP_059453528
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All DBs
Position
ca6:complement(4147420..4154624)
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AA seq
642 aa
AA seq
DB search
MAAAISAPLAPVVASQPASAEAMHANLSLYVGDLDPSVDEGKLFDVFGQVGQVVSIRVCR
DQNRRSSLGYAYVNYGNAQDAAHAMGVLNFTPINGKPIRIMFSHRDPSIRKSGYANIFIK
NLDTSIDNKALQDTFAAFGAVLSCKVAVDNNGQSKGYGFVQFDNEESAQNAIRQLNGMLI
NDKKVYVGLFIRRQERTQANGSPKFTNVYVKNLPETTTDEDLEKIFGPYGVITSAVVMRD
ANGKSRCFGFVNFQSPDAAAAAVEKLNGATVSDEKILYVGRAQSKAEREAQLRAKFEQER
ISRYEKLQGANLYLKNLDDDVNDDKLKELFSNFGTITSCKVMLDPQGHSKGSGFVAFSTP
EEATKALDEMNGKMIGRKPLYVAVAQHKEERKARLQAHFAQIRAPGGMAPLSPGIPGFHP
GAPRFASQHMYFGQSNPGMLPPQPYGFQQQLLPGMRPGVAPNYVVSYHLQRQGQPGQRMG
VRRGGNLQQVPQQQLLQRNSNQGFRYMGNSRSGMDASVPQGAVGPVMPLSFDGSGMPATP
IDVQRPGQMHMSALLSSLASASPENQRATLGEHLYPHVEKLEPNNAAKVTGMLLEMDQSE
VIHLLESPDALKRKVAEAMEVLVKAASESGVSDQLGSLALNA
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atggcagcggcgatttcggctccgttggctcccgtggtggcttctcagcctgcgtcggcg
gaggcgatgcacgcgaacctgtcgctgtacgtgggggatctggaccccagcgtagacgaa
gggaagctcttcgacgtgttcgggcaggtgggtcaggtggtgtccattagggtttgcagg
gatcagaatcggcggtcctctctcggctacgcttatgtcaattacggcaacgctcaggac
gctgctcatgctatgggggttttgaattttactcctatcaatgggaagccaatcaggatt
atgttttctcatagggatcctagcatccgaaaaagcggatatgccaacatttttattaag
aacctggacacatcaatagataacaaggcattgcaggacacttttgctgcttttggggct
gtactttcttgcaaggtggcagtcgataacaatggtcagtcgaaaggttatggatttgta
cagtttgataatgaggaatctgcacaaaatgctatcagacaattgaatggcatgctaata
aatgataaaaaggtctatgttggactttttattcgacgtcaggaaaggactcaagcaaat
ggatcacctaagttcactaatgtttatgtgaaaaatttgcctgaaacaactactgatgag
gaccttgagaaaatttttggcccctatggtgtaatcactagtgcagttgttatgagagat
gcaaatgggaagtctagatgttttggttttgtaaacttccagagcccagatgctgctgct
gctgcagttgagaagttgaatggggccactgttagtgatgagaagattttatatgtgggg
agggctcaaagtaaagcagaaagggaggcacagctgcgggccaaatttgaacaggagaga
attagtagatatgaaaaattacaaggtgctaatttatatctgaaaaatcttgatgatgac
gtaaatgacgataagctgaaggagttattctctaattttggaacaattacgtcatgcaag
gtcatgcttgatccacaaggtcacagcaagggatctggttttgtggccttttctacacca
gaggaagctactaaagctttggatgaaatgaatggaaagatgattggacggaaacctctt
tatgttgctgtggcccagcataaagaagagaggaaggctcggcttcaggcacattttgct
caaatccgagcacctggtggcatggcacctttatctccaggaattcctggatttcatcct
ggggcacctagatttgcctcgcaacatatgtattttggtcaaagtaaccctggtatgctc
ccccctcagccttatggcttccagcagcaactcttgcctggaatgcgcccaggtgttgcc
ccaaactatgttgtatcataccaccttcagcggcaaggacagccaggtcagcggatgggt
gtgcgacgaggtggaaaccttcagcaagtgccacagcagcagttacttcagcgtaactct
aaccaaggcttcagatatatgggaaattctcgaagtggcatggatgcatctgttcctcaa
ggtgctgtgggtccagtgatgccattgtcttttgatggttctggaatgccagcgactcct
attgatgtccagcgacctgggcaaatgcatatgtcagcacttttatcatctttggcttca
gctagcccagagaatcagcgagctacgctgggtgaacacctgtatccccatgtggagaag
cttgagcccaacaatgccgcaaaagtgactgggatgttgctggagatggaccaatcagag
gtaattcatctcttagagtctccagatgccctgaagcggaaggtggctgaggcaatggaa
gtccttgttaaagctgcatcagagtctggtgttagtgatcagcttgggtcattggcactg
aatgcttaa
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integrated database retrieval system
