Corylus avellana (European hazelnut): 132186735
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Entry
132186735 CDS
T09426
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
cave
Corylus avellana (European hazelnut)
Pathway
cave03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cave00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132186735
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cave03041
]
132186735
03009 Ribosome biogenesis [BR:
cave03009
]
132186735
Enzymes [BR:
cave01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
132186735
Spliceosome [BR:
cave03041
]
Complex A
U1 snRNP components
U1 related factors
132186735
Complex B
132186735
Ribosome biogenesis [BR:
cave03009
]
Eukaryotic type
Pre-60S particles
Helicases
132186735
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
132186735
NCBI-ProteinID:
XP_059456744
LinkDB
All DBs
Position
ca7:complement(9255542..9263910)
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AA seq
505 aa
AA seq
DB search
MSRYDSRSGDPTSYRDRRSDSGFGGSTGYGGSVRSSSSKISYDGTESPRKLDLEGLTPFE
KNFYVESPSVAAMSDKEVEEYRQRREITVEGRDVPKPVKSFRDVGFPDYVLQEIAKAGFV
EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILALGDGPIVLVLAP
TRELAVQIQNETTKFGASSKIKNTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH
HTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQTLYWSATWPKEVEQLARQFLY
NPYKVIIGSSDLKANHAIRQLVDIVSENQKYNKLVKLLEDVMDGSRILIFMDTKKGCDHI
TRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKCVINYD
FPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELISILEEAGQKVSPELAAMGRG
APPPPSGHGGFRDRGRGYGGGRSWS
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccgctatgacagccgctccggcgaccccacttcctatcgtgaccgcagaagtgat
tcggggtttggcgggtctacgggctatggtggttcggttcgctcctcatcaagcaagatt
agttatgatggcaccgagtcaccgaggaagttggatttggaagggttgactccttttgag
aagaacttctatgttgagtcaccatcagttgcagcaatgtctgacaaggaggttgaggag
tatcgacaacgaagggaaattactgttgaaggccgcgatgttccaaagcctgtcaagagt
tttcgtgatgttgggtttccggattatgttttgcaagagattgcaaaagctggctttgtt
gaacctactcctattcaagcgcaaggatggccaatggctttgaagggccgtgatctcatt
ggtattgctgaaacagggtcagggaagacacttgcctacctgttgcctgccattgtccat
gtcaatgcccagccaattctagctcttggagatggcccaattgtgttagtcttagctcca
acccgtgaacttgctgttcaaatacaaaatgagaccaccaaatttggtgcatcatcaaag
attaaaaacacatgcatatatggcggggttccaaagggacctcaagtgcgtgatctccag
aaaggcgttgaaattgttattgctacacctgggaggttgattgatatgttggaatcacat
catacaaacttgcgaagggttacataccttgttttggatgaggcagatcgaatgctagac
atggggtttgagcctcagatacgaaaaattatttctcagattcgtccagatcgtcaaact
ttatactggagtgctacttggcctaaggaggttgaacaacttgctaggcagttcctttat
aatccatacaaagtgataattggctcttcagatttgaaagccaaccatgctatacgccag
ctcgtggacattgtttctgagaatcagaaatataacaaactggtgaagttgctggaggat
gtcatggatggcagccgaatactgatcttcatggatacgaaaaaaggatgtgatcatatc
actcggcagcttcgcatggatggttggcctgcactctcaattcatggagataaaagtcaa
gcagaaagggattgggttctctcagagtttaaagctggcaagagtcctataatgactgca
acagatgttgcagctcgtggtttagatgtgaaggatgtgaaatgtgtgataaactatgac
tttccgggttccctcgaggactatgttcaccgcattggccgaacaggaagggctggggca
aaaggaactgcgtacacattcttcacagctgcaaacgctagatttgcaaaggaactcatt
agcatacttgaggaagcgggtcagaaggttagtcctgaattggcagcaatgggacgtggt
gcacctcctcccccgtcaggtcatgggggttttcgtgatcgcgggaggggttatggtggt
ggtcgctcgtggagctaa
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