Corylus avellana (European hazelnut): 132186835
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Entry
132186835 CDS
T09426
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
cave
Corylus avellana (European hazelnut)
Pathway
cave03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cave00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
132186835
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cave03019
]
132186835
03036 Chromosome and associated proteins [BR:
cave03036
]
132186835
Enzymes [BR:
cave01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
132186835
Messenger RNA biogenesis [BR:
cave03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
132186835
mRNA degradation factors
5'-3' decay
Decapping complex
132186835
Chromosome and associated proteins [BR:
cave03036
]
Eukaryotic type
Gene silencing
piRNA pathway
132186835
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TFIIA
EPL1
CMS1
eIF-3_zeta
VPS13_N
Motif
Other DBs
NCBI-GeneID:
132186835
NCBI-ProteinID:
XP_059456912
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All DBs
Position
ca7:4125892..4133879
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AA seq
510 aa
AA seq
DB search
MNNSRGRYLPGMGMGRGGGMNANPAFQSRAPQQQYVQRSMVQQHNHHHQQQQYHQQQQQQ
QQHQQQQQQQQQQHQQQQQWLRRGQLGGVDSGIDEVEKTVQSEAVDSSSQDWKARLNIPS
PDTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARA
KNGTGKTAAFCIPALEKIDQDNNAIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTG
GTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCILKDCSMLVMDEADKLLSPEFQPSVE
QLIRFLPEHRQILMFSATFPVTVKDFKDRYLQKPYVINLMDELTLKGITQFYAFVEERQK
VHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFR
NGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYE
DRFNLYRIEQELGTEIKQIPPHIDQAIYCR
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
atgaacaacagtagagggaggtatctgccggggatgggcatgggccgaggtggaggcatg
aacgcgaacccggcgttccagtcgagggctccacagcaacagtacgtgcagaggagcatg
gtgcaacagcacaatcaccaccaccagcaacagcagtatcatcagcagcagcagcaacag
cagcagcatcaacagcagcagcagcaacagcagcagcagcatcagcagcagcaacagtgg
cttaggaggggccagttgggcggtgtcgattcgggcatcgacgaggtcgagaagaccgtg
cagtccgaggccgtggactcgagttcgcaagattggaaggcaaggctaaacataccgtcc
cctgatacacgctacagaactgaggatgtgacagcaaccaagggaaatgaatttgaggac
tactttctgaagcgtgagttgcttatgggaatatatgaaaaaggcttcgaaagaccatct
ccaattcaggaagaaagtattcctattgctttaactggaagtgatattcttgctagagca
aaaaatggaactggcaaaacggctgcattttgcattccggcattggaaaaaattgatcaa
gataacaatgctattcaagttgttatacttgttccaactcgagagttggctcttcaaaca
tctcaagtctgtaaagagctcggcaagcatttgaaaatccaagttatggttacaacgggt
ggtaccagcttgaaggatgatatcatgcgcttatatcaaccagttcatttacttgttgga
actcctggaagaatattagatcttgcaaaaaaaggagtttgcattttgaaagactgttct
atgcttgttatggatgaggctgataagcttttatctccggaatttcaaccttcagtagag
cagctgattcgatttctgcctgaacatcgtcaaattttgatgttttcagccacatttcct
gttacagtcaaggactttaaagatagatatctacaaaagccttatgttattaatcttatg
gatgagcttactctaaagggtatcacacaattttatgcttttgttgaggagagacagaaa
gtccactgcctaaacactcttttctctaagctgcaaataaaccaatctatcatcttctgc
aattcagtgaatcgggttgaactgttggccaagaaaattacagaacttggttattcatgt
ttttatattcatgcaaagatgctgcaagaccatcgtaacagagtgtttcatgacttccgt
aatggcgcatgtaggaatcttgtttgtactgatttatttacaagaggaatagatattcaa
gcagtcaatgttgttattaactttgattttcccaagaactcagaaacatatctgcacagg
gttggtcgatctggaaggtttgggcaccttggtttagctgtgaatttgatcacctatgaa
gaccgctttaacttgtacaggattgagcaagaacttgggactgagatcaagcaaattccg
ccacatatcgatcaggcaatttactgccggtga
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