Corylus avellana (European hazelnut): 132187543
Help
Entry
132187543 CDS
T09426
Name
(RefSeq) SNF2 domain-containing protein CLASSY 1-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
cave
Corylus avellana (European hazelnut)
Pathway
cave03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cave00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
132187543
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cave03400
]
132187543
DNA repair and recombination proteins [BR:
cave03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
132187543
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
SAWADEE
zn-ribbon_14
Motif
Other DBs
NCBI-GeneID:
132187543
NCBI-ProteinID:
XP_059457870
LinkDB
All DBs
Position
ca7:complement(29472112..29479975)
Genome browser
AA seq
1261 aa
AA seq
DB search
MMKKRHLHQSKHVFDDYPFEALLYGSWEAVELIRIINGTMAMHFMDSQYIIEDKSPFSNL
RIRSRQATLSDCTCYLRPGIDICVLSASQHAKSSDEENREPVWLDARISSIERKPHEYHC
SCQFYVNFYVNQGPLGSETGTLSKEASIVGIDKISILQRLERVPCEDRHYRWAYSENCSE
LPKTKLFLGKFVSELSWLLVASLFKQIAFDVRSVKNKIVYQILGADDDSCTLDSGNYLNA
VNFRVENDILLPTVVQFFPADAIEAGPASEMQEAGSPSYDLTGLRRSKRRNVQPERFLGC
DSASEIDVGFVRTRPYKIEQWKDDEMLLPLACLFGNHATSSEVQNEVEQKIYSRSKNPCK
DLLVCKSKSKSREVKSSIASQIEHKNQLAIVPLPDESDPIAFEHYHHHAKSRRNYEDDIT
EISSKYYYIDSTPKAQTKKISGLEDMDFEGGWEGKASEREVQRKRHHSVYTKRDIPSEER
TYQKRSLSFGAYKDMINSFLKNMDTTVKKDEPQIIDQWKKCTETNSLDQSTGLEPPPDED
EGEISETDMLWKEMELAMASSYLFEDNEGSNAGMSIGIMKKLSESCQHEYKLDEEIGILC
SRCGYVSSEIRDVSAPFMQFTSWNTEEKQCNEENSMHKPDEDDGLEVLCRQASADVPLSE
ENENVWALIPELRGKLHLHQKRAYEFLWRNIAGSLKPSLMKPASKKTGGCVISHSPGAGK
TLLIISFLVSYLKLFPGKRPLVLAPKTTLYTWYKECIKWEIPVPVYLIHGRRTYRVFKQK
SPSFHKPMSFPGVPKPTDDVMHVLDCLEKVQKWHAHPSVLVMGYTSFLALMREDSKFAHR
RFMARVLRESPGILVLDEGHNPRSTKSRLRKVLMKVETDLRILLSGTLFQNNFCEYFNTL
CLARPMFVNEVLKELDPKYKRQKKGTEKALYLREARARKFFLDKIAKRIDSNVGEERRQG
INMLRNITNGFIDVYEGGSSDSLPGLQIYTLLMNSTDIQHEILVKLHKVMAECHGYPLEL
ELLITLGSIHPWLVKTTSCASKFFNMRELMELDKYKFDLKKGSKVRFVLNLVYRIFKKEK
VLIFCHNIAPVKLFLELFEHIFKWQRGREVLVLTGDLELFERGRVMDKFEEAGGASRVLL
ASITACAEGISLTAASRVILLDSEWNPSKTKQAIARAFRPGQQRVVYVYQLLQTGTLEED
KYRRTTWKEWVSSMIFSEAFVEDPSRWQAEKIEDDVLREMVEEDRTKTFHMIMKNEKAST
S
NT seq
3786 nt
NT seq
+upstream
nt +downstream
nt
atgatgaagaaaaggcatctgcatcaatccaaacatgtatttgatgattacccttttgaa
gctcttttgtatggctcatgggaagcagtggagctcatcagaatcataaatgggactatg
gccatgcatttcatggatagtcagtacataattgaggataaaagtcccttctcaaacctc
cgtatacggtcaaggcaagctactttatctgactgcacctgctatctgagacccggcatc
gacatatgtgtgctttcagcatctcaacatgcaaaaagttcagatgaggaaaaccgggag
cctgtgtggcttgatgctagaataagctctattgagaggaagcctcatgaatatcattgc
tcatgccagttttatgttaatttctatgttaaccaaggccctctaggttcagagacagga
acacttagtaaagaggctagcatagtgggaatcgataaaatctccatcctccaaaggctt
gaacgtgttccttgtgaagatcgacactatcgttgggcttactctgagaactgctctgag
ttgcccaaaactaaattgtttctggggaaattcgtttctgagctttcatggttgcttgtt
gcatcactttttaaacagattgcttttgatgtaagatcggtgaaaaacaagattgtctat
caaattttgggagctgatgacgacagctgtacattagactcgggtaattacttaaatgct
gtaaattttagagtagaaaatgatatcttactacccactgtagtacaattttttccggca
gatgccattgaggcaggtccagcttctgaaatgcaagaagctggatcaccatcttatgat
ctcacgggcttgcgacgttccaaacgtcgaaatgtacaacccgagcgctttcttggctgt
gatagtgcgtcagagatagatgttggctttgtccgaaccaggccatacaagatagaacag
tggaaagatgacgaaatgttattaccactagcttgcctgtttggtaatcatgcaaccagt
tcagaagtgcaaaatgaggttgaacaaaagatctattcccgaagtaaaaatccctgtaaa
gatctactagtctgcaaaagtaagagtaaatcaagggaggtaaaatcgagcatagctagt
caaatagaacataaaaatcaacttgctattgttcctctgcctgatgaaagtgatccaata
gcctttgaacactatcaccatcatgccaagagtcgccgaaattatgaagatgatatcact
gaaatttcctccaagtattattacattgatagtacccctaaagcacagacaaagaaaatt
tctggcttggaagatatggattttgaaggtggatgggaaggaaaagcttctgagagagaa
gtccaaagaaaaagacatcactctgtatatacaaaaagggatattcctagtgaagaaaga
acttatcagaagagatccttgagttttggtgcatacaaggatatgataaattctttcttg
aagaacatggatacaacagtcaagaaagatgagccacagatcattgaccagtggaaaaaa
tgcacagaaacaaacagcttggaccaaagcacggggttggaaccgcccccagatgaggat
gagggggagatctcagagactgacatgttgtggaaagaaatggaactagccatggcatca
agttatctttttgaagacaatgagggctcaaacgctggaatgtccattgggatcatgaaa
aaattaagtgaaagttgccagcatgaatacaaattggatgaagaaattggaattctgtgc
tctagatgcggctatgtgagctctgagataagagatgtttcagcaccctttatgcaattc
acaagctggaacacagaagagaagcaatgcaatgaagaaaattctatgcataagccggat
gaagatgatggtttggaagttctctgtcgtcaagcctctgctgatgtgccattatcagaa
gaaaatgagaatgtgtgggccttaatccctgaacttagaggaaaattacacttgcaccaa
aaaagagcttatgaatttctatggcgaaatattgctgggtctttaaaaccttcacttatg
aaaccagcatccaagaaaacaggtggttgtgttatttctcattctcctggagctgggaaa
acgcttctcattatttcattccttgttagctatttgaaattgttccctggaaaacgaccc
ttggttcttgctccaaagactacactgtatacctggtacaaggaatgcatcaagtgggaa
attcctgttccagtttatctaattcatggtcgtagaacctacagagtcttcaagcagaaa
tcaccatcctttcacaaacctatgtcttttccaggagttccaaagcccactgatgatgtc
atgcatgttttggattgcctagagaaagtacagaagtggcatgcacacccaagtgttctt
gtcatgggttatacctcatttctagcattaatgcgagaagactcaaagtttgcacacaga
aggtttatggctagagtgttgcgggaaagtcccgggatattggtactagatgaagggcac
aaccctagaagtacaaaatcaaggttgaggaaggttttgatgaaagttgaaacagacttg
agaatattgctttcaggtacattgtttcagaacaatttctgtgaatattttaacaccctc
tgcttggcaagacccatgtttgtcaatgaagttttgaaggaattagacccaaaatacaag
aggcaaaagaaagggacagaaaaagcactctatttgagagaagcccgagcaagaaagttc
tttttggataagattgctaaaagaattgattcaaacgtcggagaagagaggaggcagggt
ataaacatgttgagaaatatcacaaatggatttatagatgtgtatgaaggtggaagtagt
gacagccttcctggtttacagatttacaccttattaatgaattcaactgacatacaacat
gaaatcttggttaaactgcacaaagtaatggctgaatgccatggatatccgttggaatta
gagcttctcataacccttgggtcaatacatccttggttagtgaaaaccacaagctgtgct
agcaagttttttaacatgagggagctaatggagcttgacaagtacaagtttgatctgaag
aaaggctcaaaagtaagatttgttttgaaccttgtgtatcgcattttcaagaaggagaag
gtactcatcttctgccacaacattgcacctgttaaattgtttctggagttatttgagcac
atcttcaagtggcaaaggggtagagaagttttggtccttactggggatttagagttattt
gaaagaggaagagtgatggataaatttgaggaggcagggggggcatcaagggtacttctt
gcttcaatcacagcttgtgctgaagggattagtttgacagcagcttctcgggtgatatta
ttggattctgaatggaatccttccaagacaaagcaggctatagcaagggctttccggcct
ggtcagcagagggtagtttatgtgtatcagctcttgcaaacgggcacgctcgaagaagac
aagtatcgaaggacgacgtggaaggagtgggtgtcaagtatgattttcagtgaggcattt
gtggaggatccttctcgttggcaagctgaaaagattgaagatgatgttttaagggaaatg
gtggaggaggatcgaactaaaacattccatatgatcatgaagaatgaaaaggcttcaaca
agttga
DBGET
integrated database retrieval system
