Corylus avellana (European hazelnut): 132188258
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Entry
132188258 CDS
T09426
Name
(RefSeq) pre-mRNA-processing-splicing factor 8A
KO
K12856
pre-mRNA-processing factor 8
Organism
cave
Corylus avellana (European hazelnut)
Pathway
cave03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cave00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132188258
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cave03041
]
132188258
Spliceosome [BR:
cave03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
132188258
Complex C
U5 SnRNP specific factors
132188258
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
132188258
NCBI-ProteinID:
XP_059458660
LinkDB
All DBs
Position
ca7:complement(21307774..21320417)
Genome browser
AA seq
2349 aa
AA seq
DB search
MWNSGQIAPPGTTGSSIPPPPAAQPSYTVLPSPAEAEARLEEKARKWQQLNSKRYSDKRK
FGFVETQKEDMPPEHVRKIIRDHGDMSSKKYRHDKRVYLGALKFIPHAVYKLLENMPMPW
EQVRDVKILYHISGAITFVNEIPWVVEPIYLAQWGTMWIMMRREKRDRRHFKRMRFPPFD
DEEPPLDYADNLLDVDPLEPIQLEMDEEEDSAVYTWFYDHKPLVRTKLINGPSYRKWHLS
LPIMATLHRLAGQLLSDLIDRNYFYLFDMESFFTAKALNMCIPGGPKFEPLYRDMEKGDE
DWNEFNDINKLIIRSPLRTEYRIAFPHLYNNRPRKVKLCVYHTPMIMYIKTEDPDLPAFY
YDPLIHPITSTNKERPEKKNRDDEDDDDDFILPEGVEPFLRDTQLYTDTTAAGISLLFAP
RPFNMRSGRMRRAEDIPLVSEWYKEHCPPSYPVKVRVSYQKLLKCFVLNELHHRPPKAQK
KKHLFRSLQATKFFQTTELDWAEAGLQVCKQGYNMLNLLIHRKNLNYLHLDYNFNLKPVK
TLTTKERKKSRFGNAFHLCREILRLTKLVVDANIQFRLGNVDAFQLADGLQYTFSHVGQL
TGMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPMWRVWLFFLRGIVPLL
ERWLGNLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDVLDAMPEGIKQNKART
ILQHLSEAWRCWKANIPWKVPGLPVPIENMILRYVKSKADWWTNVAHYNRERIKRGATVD
KTVCRKNLGRLTRLWLKAEQERQHNYLKDGPYVTPEEAVAIYTTTVHWLESRKFSPIPFP
PLSYKHDTKLLILALERLKESYSVAVRLNQLQREELGLIEQAYDNPHEALSRIKRHLLTQ
RAFKEVGIEFMDLYSYLIPVYEIEPLEKITDAYLDQYLWYEGDKRHLFPNWIKPADSEPP
PLLVYKWCQGINNLQGIWDTSEGQCVVMLQTKFEKFFEKIDLTMLNRLLRLVLDHNIADY
VTAKNNVVLSYKDMSHTNSYGLIRGLQFASFVVQYYGLVLDLLLLGLTRATEIAGPPQMP
NEFITYWDTKVETRHPIRLYSRYIDRVHILFRFTHEEARDLIQRYLTEHPDPNNENMVGY
NNKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEWENSFVSVYSKDNPNLLFS
MCGFEVRILPKIRMSQEAFSNTRDGVWNLQNEQTKERTAVAFLRVDDEHMKVFENRVRQI
LMSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLLVKCENKIQTRIKIGLNSKM
PSRFPPVIFYTPKEIGGLGMLSMGHILIPQSDLRYSQQTDVGVTHFRSGMSHEEDQLIPN
LYRYIQPWESEFIDSQRVWAEYALKRQEAQAQNRRLTLEDLEDSWDRGIPRINTLFQKDR
HTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDVIQALGGVEGILEH
TLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANV
YVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESVVMDLCQVLDQELDALEIE
TVQKETIHPRKSYKMNSSCADILLFAAHRWPMSKPSLVAEPKDVFDQKASNKYWIDVQLR
WGDYDSHDIERYTRAKFMDYTTDNMSIYPSPTGVMIGLDLAYNLHSAFGNWFPGSKPLLQ
QAMNKIMKSNPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGEIFSNQIIWFVDDTNVYR
VTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSVWAGQKRLGQLAKWKTAEEVAA
LVRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKIEKFGDLIL
KATEPQMVLFNIYDDWLKSISSYTAFSRLILILRALHVNNEKAKMLLKPDKTIITEPHHI
WPSLTDDQWMKVEVALRDLILSDYAKKNNVNTSALTQSEIRDIILGAEITPPSQQRQQIA
EIEKQAKEASQLTAVTTRTTNVHGDELIVTTTSPYEQAAFGSKTDWRVRAISATNLYLRV
NHIYVNSEDIKETGYTYIMPKNILKKFICIADLRTQIAGYLYGISPPDNPQVKEIRCIGM
PPQWGTHQQVNLPAALPEHDFLNDLEPLGWMHTQPNELPQLSPQDLTTHAKILESNKQWD
GEKCIILTCSFTPGSCSLTAYKLTPSGYEWGRVNKDTGSNPHGYLPTHYEKVQMLLSDRF
FGFYMIPDNGPWNYNFMGVKHAPSMRYGVKLGTPREYYHEDHRPTHFLEFSNLEEGETFA
EGDREDTFT
NT seq
7050 nt
NT seq
+upstream
nt +downstream
nt
atgtggaacagcggccagattgcgccgccggggaccactggctcgtcgataccgcctcct
ccagcggcgcagccctcgtacacggtgctgccgtcgccggccgaggccgaggcgcggctc
gaggagaaggccagaaaatggcagcagctcaattcgaagcgctacagcgacaagcgcaag
ttcgggttcgtcgagacgcagaaggaggacatgccgcccgagcacgtcaggaagatcatt
agagaccatggggacatgtcctccaagaagtatcgtcatgataaacgtgtctatcttggg
gcccttaaattcattccacatgcagtttacaagctcctggagaatatgcctatgccatgg
gagcaggtccgtgatgtgaagattttgtatcatatttctggggcaattacatttgtgaat
gaaataccatgggttgttgaacctatatatctggctcagtggggtacaatgtggatcatg
atgcgaagggagaagagagatcgtcggcatttcaagagaatgcggtttccaccatttgat
gacgaggaaccaccattagactatgctgataatcttttagatgttgatcctctggagcct
atccaattagagatggatgaagaagaggattctgctgtatatacttggttttatgaccat
aagcctcttgtgagaacaaaactcataaatggtccaagttaccgtaaatggcatctctcc
cttcctatcatggcgactcttcatcggcttgcaggacagctgctttctgatttaattgac
agaaattacttctacttgtttgacatggagtcattttttacagccaaagcattgaacatg
tgtatacctggtggccctaaatttgagcctttgtaccgtgacatggagaaaggggatgag
gattggaatgagttcaatgatatcaacaagctaattattcggtcacctctcaggacagaa
tatagaattgcattccctcatctctataacaataggcctaggaaagttaagctttgcgtg
tatcacactcccatgatcatgtacataaaaacggaggatcccgatttacctgcattttat
tatgatcccttgatacatccaataactagtactaacaaggagcggcctgaaaagaaaaat
cgtgatgatgaggatgatgatgatgatttcatcttgccagagggggtggaaccttttctg
agagacactcaactttatactgatactacagctgctggtatttccttattgtttgcccca
cgtccttttaacatgagatctggtcggatgagaagggcagaagatataccccttgtgtcg
gagtggtataaggagcattgtcctccgtcctatccagttaaagttcgagtcagctatcaa
aaattgctaaaatgctttgtgttgaatgaactgcatcacagacctcccaaggctcaaaaa
aagaagcacttgttccgatctctgcaagcaacaaagtttttccaaaccacagaacttgat
tgggctgaagcaggtcttcaagtttgtaagcagggatataacatgctaaatctgctgata
cataggaaaaatttgaattacctccaccttgattataatttcaatctgaagcctgtcaag
accctcactacaaaggagcgtaagaagtcacgatttggtaatgctttccatctctgtcgt
gaaattctgcgtttgacaaagcttgtagttgatgccaatatccagtttcgcttgggtaat
gtggatgccttccaactggccgatggtttgcaatatacattttctcatgttggtcaactg
actggcatgtaccgttacaagtataggcttatgcgtcagatcagaatgtgtaaagacttg
aaacacttgatttactatcggttcaatactggtcctgttgggaaaggacctggatgtggg
ttttgggcaccaatgtggagggtgtggttgttctttcttcgtggtatagtgcctctcctg
gaacgatggttagggaatttacttgcacgtcaatttgagggacgccattcaaaaggagtg
gcaaagaccgttactaaacaacgtgttgaaagccacttcgatttggagcttagagcagct
gttatgcatgacgttcttgatgcgatgccagagggcattaagcagaataaagctagaact
atattgcagcatcttagtgaggcgtggcgatgttggaaagcaaatattccttggaaggtt
cctggtttgccggttcccattgagaacatgattcttcgttatgtcaagtcaaaagcagac
tggtggacaaatgttgctcactataaccgggagcgtataaaaagaggagcgacagttgat
aaaacagtttgtcggaagaatcttggaagactgactcgcctttggttgaaggcagaacag
gaacgacaacacaactatttgaaagatggtccatatgtcacaccagaagaagcggttgcc
atttacacgacgacagtacattggttggagtcaagaaagttctctcccattccgttccct
ccattgtcttataagcatgacacaaaactacttatccttgctctggagagattgaaggaa
tcttacagtgtggctgtgagattaaaccagcttcaaagagaggagttgggtctcattgag
caagcttatgataacccgcatgaagcactgtcacgaattaagcgacacctactcactcag
cgtgctttcaaagaagttggcatagagtttatggatttgtacagctatctcattccagtt
tatgagattgagcctctcgagaagattacagatgcatatcttgaccaatatttatggtat
gaaggtgacaagcgtcatctctttccgaactggatcaagcctgcagattcagagcctccc
ccacttttggtttataaatggtgtcagggtataaacaatttacaaggtatatgggacaca
agtgaggggcaatgtgtagtgatgcttcaaacaaagtttgagaagttctttgagaagatt
gacttgacaatgttaaacaggctcttgcgattggttcttgaccacaacattgctgattat
gtcactgcaaagaacaatgttgtgttgtcgtataaggatatgagtcacacaaattcgtat
ggtcttatacgtggactccagtttgcttcttttgttgtacagtattatgggcttgtgctg
gatctcttgcttcttggattgactcgagctactgaaattgctggtcctccacagatgcct
aatgagttcatcacttattgggacacaaaagttgagacccggcaccctattcggctgtat
tctcgatacatagacagggtccatatattgttccgcttcacccacgaagaggctcgtgac
cttatccagcggtatcttacggagcatcctgatcctaacaatgaaaatatggttggatat
aacaataagaagtgctggccaagggatgctagaatgaggctcatgaaacatgatgtaaat
cttgggaggagtgttttctgggatatgaagaaccgtcttcctcgaagcatcacaacattg
gagtgggagaacagctttgtttctgtttacagcaaggataatccgaacttgcttttcagc
atgtgtgggtttgaagttcggatacttcctaaaataagaatgagccaggaagcattcagt
aatacaagagacggcgtctggaatctgcagaatgaacagaccaaagaacggactgctgtt
gctttcttgcgggttgatgatgaacacatgaaggtgtttgagaatcgtgtgaggcagatt
cttatgtcttcaggatctacaacatttacaaaaattgtcaataaatggaatacagccctg
ataggtctcatgacttatttccgtgaagccacggtacatactcaagagctgttagatttg
ctggtcaaatgtgaaaataagattcaaacccgtattaagattgggttgaactcaaagatg
cctagcaggttccctcctgtcattttctacactccaaaggaaattggaggacttggcatg
ctctccatgggtcacatattgattccacaaagtgatctccgctatagccagcagacagat
gtcggtgtaactcactttaggagtggaatgagtcatgaagaggaccagctgattcccaat
ctttatcgatatatacagccatgggagagtgagttcatagattcacagcgtgtttgggca
gaatatgcactgaaaaggcaggaagctcaggcacaaaataggcgtttgacccttgaagat
ttggaagattcatgggacaggggaattccccgtataaatactttgtttcagaaggatcga
cacacactggcatatgacaaaggatggagggtgcgcacagactttaaacagtaccaagtt
ttaaaacagaatcctttctggtggacacaccagaggcatgatggtaaactttggaacttg
aacaactatcgaactgatgtcatccaagctttgggaggtgttgagggaatccttgagcat
accctattcaaaggaacatactttccaacttgggaaggtctcttttgggaaaaggcatct
ggctttgaggaatcaatgaagtataagaagctgacaaatgctcagagatctggtctcaac
caaatccctaaccgtaggttcactctttggtggtcacctactataaatagagcaaatgtt
tacgtgggtttccaggtccagttggatctaactggaatcttcatgcatgggaagatccct
accttgaagatatcgctgattcagatattccgtgctcatttgtggcaaaagattcatgag
agtgttgttatggatctttgtcaagttttggatcaggagttggatgctttggaaattgag
actgtgcagaaggaaacaatccatccacggaagagttacaaaatgaacagctcttgtgcg
gacattcttctctttgctgctcatagatggccaatgtcaaaacctagtcttgtggctgag
ccaaaggatgtgtttgatcagaaagcaagcaataagtattggatagatgtgcagctccgc
tggggagattatgactctcacgatattgagcgctacacgagggccaaatttatggattat
acaacagacaatatgtctatatatccatctcctactggggtgatgattgggcttgatttg
gcctataacttgcattctgcattcggtaattggtttcctgggtcaaagcctctgctccag
caggcgatgaataagatcatgaagtcaaatccagccttgtacgtcttgagggaacgtata
agaaaaggtttacagttgtattcttctgagcccactgagccgtatttgtcatctcagaac
tatggagagatcttcagcaatcaaataatatggtttgtagatgacacaaatgtgtatcgt
gttactattcataagacatttgaaggaaatcttacgacaaaacccatcaatggtgccatc
tttatattcaatccaaggactgggcagctgtttctgaaggtcatccatacaagtgtgtgg
gcaggacagaagcggcttggtcagttggctaagtggaaaacagcagaagaagttgctgcc
cttgtgcggtctttgccagttgaagaacaaccaaagcaaattattgtgactcgtaaaggt
atgctggatccattggaggtccatttgctggatttccccaacatagttataaaaggtagt
gagctgcagcttccgttccaggcatgcttaaagattgagaaatttggtgatctgattttg
aaggctacagagccacaaatggttctttttaacatttatgatgattggttgaaaagtatt
tcatcatacactgcattctcccggctcattctgatcctgcgtgcacttcatgtcaacaat
gagaaggcaaagatgttactaaagcctgacaaaacaatcatcactgagccacaccacatc
tggccgtctctcactgatgatcaatggatgaaggttgaggttgctctaagagatctcata
ctctcagactatgcaaagaagaacaatgtgaatacatcagctctgacacagtctgagatc
cgtgatatcatacttggagccgagattactccaccttctcaacagagacagcagattgct
gagatcgagaaacaggcgaaagaagcaagtcagctgacggctgtgacaacaaggactaca
aatgtgcatggtgatgaactgattgtcacgaccacaagtccatatgagcaagctgcattt
ggatctaaaactgattggcgtgtgagagcaatatcagcgacaaatctctatcttcgtgtc
aatcatatttatgtgaattcagaggatataaaggaaactggatatacttatatcatgcca
aagaacattttgaagaagtttatctgcatagcagatctgcggacacaaattgctggttac
ttatatggaataagcccccctgacaacccacaggtgaaggaaatccgctgcattggcatg
cccccacaatggggaacccatcagcaagttaatctcccagcagctctcccagagcatgat
ttcctgaatgatttggagcctttgggatggatgcatactcaacctaatgaacttccccag
ttatcaccccaggatctcacaactcatgctaagatcttagagagcaacaaacaatgggat
ggggagaagtgcattattttgacttgcagtttcactcccgggtcgtgctccttaactgcg
tacaagctgacaccatcggggtatgagtggggacgcgtgaacaaggacactggaagcaat
cctcatggctaccttcccactcattacgagaaggtccaaatgctcctcagtgaccgcttc
ttcggtttctatatgattccggataatggtccatggaattacaacttcatgggggtgaaa
cacgcaccaagtatgaggtatggggtgaagctggggacacctcgagaatactaccatgag
gaccacaggccaactcatttcctggagttcagcaacttggaggagggagagacgtttgct
gaaggagatcgcgaagataccttcacttaa
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integrated database retrieval system
