Corylus avellana (European hazelnut): 132188858
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Entry
132188858 CDS
T09426
Name
(RefSeq) endoribonuclease Dicer homolog 1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
cave
Corylus avellana (European hazelnut)
Brite
KEGG Orthology (KO) [BR:
cave00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cave03036
]
132188858
Chromosome and associated proteins [BR:
cave03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
132188858
microRNA pathway
RISC loading complex
132188858
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
dsrm
DND1_DSRM
Helicase_C
PAZ
DEAD
ResIII
Dicer_dsRBD
Dicer_PBD
SNF2-rel_dom
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
132188858
NCBI-ProteinID:
XP_059459405
LinkDB
All DBs
Position
ca7:complement(7164239..7180391)
Genome browser
AA seq
1949 aa
AA seq
DB search
MENEARVPGSVGGELTPASSADDVRPSYWLDACEDIPCDLVDFDTCPVPNSVDNVGNQDG
LVSDFFGGIDHILESIKNGGGVPLPQLLDSNSAVNGGDTWFQGDPSEGSFPPSDGIHKEI
TEKKVVPLVGDNSSRENGMQKVEKRGSADGEERSSKRARIGNFKKERCYSSRVQNHPKDW
ERCLSRKRGRDWDEIDRRDRDNGRRREHYSSNRRDGRDREWRDREAKGYWERDRSGSGDM
VFRLGAWEADRNKDANKAANEKIQESDARAERKSEEEPKEKIPQEHARQYQLDVLEQAKK
KNTIAFLETGAGKTLIAVLLMKSVSNDLQRLNMKMLAVFLVPKVPLVYQQAEVIRERTGF
QVGHYCGEMGQDFWDARRWQREFEAKQVLVMTAQILLNILRHSIIKMEAINLLILDECHH
AVKKHPYSLVMSEFYHTTPKDKRPIVFGMTASPVNLKGVSSQVDCAIKIRNLESKLDSIV
CTIKDRKELEKHVPMPSEVVVEYDKAASLWSLHEQIKQMEAEVEEAAKSSSRRSKWQFMG
ARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKVAQSFLTALQN
DERANYQLDVKFQESYLNKIVSLIQCQLSEGAASDKDTKVADTESDVAQDGTEADEIEEG
ELPDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLNYQNTEDFRAIIFVERVVSAL
VLPKVFTELPSLSFIKCASLIGHNNSHEMRTCQMQDTIAKFRDGRVTLLVATSVAEEGLD
IRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYLLMVERGNLSHEAFLRNARNSEETLRK
EAIERTDLSHLKDVSRLISADTSPGTVYQVESTGAVVSLNSAVGLIHFYCSQLPSDRYSI
LRPEFIMERHEKSGGPTEYSCKLQLPCNAPFEKLEGPICSSMRLAQQAVCLAACKKLHEM
GAFTDMLLPDKGSGEEREKVDQNDEGDPLPGTARHREFYPEGVADILKGEWILSGRDVCN
DSEVLHLYVYAVKCVNIGSSKDPFLTQVSDFALLFGNELDAEVLSMSMDLFVARTMSTKA
SLVFRGLMDITESQLASLKSFHVRLMSIVLDVDVEPSTTPWDPTKAYLFVPVVGDKSLDP
MREIDWDLIENIINTDAWNNPLQKARPDVYLGTNERTLGGDRREYGFGKLRNGMAFGQKS
HPTYGIRGAVAQFDVVKASGLVPNRDGMELQEHVDLTKGKLMLADTCMSAEDLVGRIVTA
VHSGKRFYVDSVRYDMTAENSFPRKEGYLGPLEYSSYADYYKQKYGVELIYKQQPLIRGR
GVSYCKNLLSPRFEHKEAPEDETEENLDKTYYVFLPAELCLVHPLPGSVVRGAQRLPSVM
RRVESMLLAIQLKDKINYTVPASKILEALTAASCQETFCYERAELLGDAYLKWVVSRFLF
LKYPQKHEGQLTRMRQQMVSNMVLYHYALSKGLQSYIQADRFAPSRWAAPGVQPVFDEDT
KDGESSFFDQDGSRAETEHGMDLCSDGYENDEMEDGELESDSSSYRVLSSKTLADVVEAL
IGVYYVEGGKHAANHLMKWIGIQVEFDADEIECITRPSNVPDSILRSVNFDALEGALNIK
FNDRGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITKHLFFTYTDLPPGRLTDLRA
AAVNNENFARVAVKHSLHLHLRHGSSALDKQIRDFVKEVHDELSKPGFNSFGLGDCKAPK
VLGDIVESIAGAIFLDSERDTSAVWTVFQPLLQPMVTPETLPMHPVRELQERCQQQAEGL
EYKASRNGNFATVEVFIDGVQIGIAQNPQKKMAQKLAARNALAALKEKETAEAKEKGDEN
GKKKKNGNQTFTRQTLNDICLRRNWPMPSYRCVSEGGPAHAKRFTFAVRVNTTDKGATDE
CVGEPMPSVKKAKDSAAALLLELLNKLYS
NT seq
5850 nt
NT seq
+upstream
nt +downstream
nt
atggagaatgaggctagggttccaggaagcgttgggggggagctgacacccgcgtcatcg
gcggacgatgtgaggccgtcttactggcttgatgcctgcgaggacataccctgcgacctc
gtggatttcgacacttgtcctgttcccaactctgtcgacaacgttggaaatcaggacggc
cttgtcagcgatttcttcggtggaatcgatcacatacttgagagcatcaagaacggtggc
ggcgtccctctacctcagctccttgattctaattccgccgtcaatggcggggatacgtgg
ttccagggcgacccatctgagggctcatttccgccgtccgatggcatccacaaagagatt
accgaaaagaaagtggtgccgctggtgggggataattcctcaagggaaaatggaatgcaa
aaggttgagaagcggggtagtgcggatggggaagagaggtctagtaaaagggctaggatt
ggtaacttcaagaaggagaggtgttactcgagcagagtgcagaatcaccccaaggattgg
gaaagatgtttgagtaggaagaggggtcgagattgggatgagattgataggagggatagg
gataatggtaggagaagagaacattacagtagtaataggagggatggtagagatagggaa
tggagggacagagaggcaaagggttattgggagagggataggtcgggttctggtgacatg
gttttccgcttaggtgcttgggaagccgaccgtaacaaagacgccaacaaggcggccaat
gaaaaaatccaggaatctgatgcgagggcggagaggaaatccgaggaggaaccaaaagaa
aaaattccccaagaacatgctagacagtatcaattggatgttcttgaacaggcaaagaag
aaaaacacaatagcctttcttgaaactggggctgggaagacactcattgctgttcttctc
atgaaaagtgtttccaatgatttacaaaggctgaatatgaaaatgcttgccgtgttttta
gttcctaaagtgccgctagtctatcagcaagcagaagttattcgcgagcggactggtttc
caagtgggccattattgtggtgaaatgggtcaagatttctgggatgctcgaagatggcag
cgtgagttcgaagcaaaacaggttttagtgatgacagctcaaattctgttgaacattcta
aggcacagcataataaaaatggaagcgataaatctccttattctagatgagtgtcatcat
gcagtgaagaaacatccatattctttagtgatgtctgagttctatcacacgacacccaag
gataagagaccaattgtatttggaatgactgcttctcctgttaacttaaagggcgtttcc
agccaagttgattgtgcgataaagattcgtaatctggaaagtaaactagattcgatagtt
tgtaccattaaagaccgtaaagagctggagaaacacgtaccaatgccctcagaagttgtg
gtggagtatgacaaagcagccagcttatggtcacttcatgagcagataaagcaaatggaa
gctgaagttgaagaagctgcaaaatctagctctagaagaagtaagtggcagttcatggga
gcaagagatgccggggccaaggaggagctgcgccaagtctatggtgtttctgaaaggaca
gaaagtgatggggctgctaatttaattcaaaagctgagggctataaattatgcactaggt
gaactgggtcagtggtgcgcttacaaggttgcacaatcttttttgactgctttacaaaat
gatgagagggcaaattaccaacttgatgtcaagtttcaagaatcctacctgaacaaaatc
gtatctctcatacaatgtcaattatctgagggggctgcttctgacaaggatacaaaagtt
gcagacacagaaagtgatgtggctcaggatgggactgaagctgatgagattgaggaggga
gagcttcctgacagtcatgttgtatctggtggggagcatgtggatgtgataataggagct
gctgttgctgatggaaaagtgacgccaaaagtgcagtcactgattaaaatacttctcaac
tatcagaacacagaagattttcgtgcaatcatttttgttgagcgagttgtgtctgcttta
gttcttcctaaggtttttacagagcttccctctctaagttttattaaatgtgcaagcttg
ataggtcacaacaatagtcatgaaatgcggacatgccaaatgcaggacacaattgccaaa
ttccgggatggacgtgtgaccttgttagttgccactagtgttgctgaggaaggacttgat
attcggcaatgcaatgttgttattcgctttgaccttgcaaaaactgtcttggcatacatt
cagtctaggggccgggctagaaaacctgggtctgattacctcctgatggttgagaggggg
aatttgtcacatgaagcattcttaaggaatgccaggaatagtgaggagaccttgcggaaa
gaagcaatagagagaactgaccttagtcatcttaaagatgtttcaagattaatttcagcg
gatacctctccgggtactgtgtaccaggtggagtcaactggtgcggttgtaagcttaaat
tctgctgttggcctcatccatttctactgctctcaactacccagtgacaggtattcaata
cttcgtcctgagtttatcatggagaggcatgaaaagtcagggggtcccactgaatattca
tgcaagcttcaactgccttgtaatgcaccatttgagaaacttgagggtcccatctgtagt
tcaatgcgccttgcacagcaggctgtttgtttggctgcttgcaagaagctccatgagatg
ggagcatttacggacatgctcttgccagacaagggaagtggggaagaaagagaaaaagtt
gaccagaatgatgaaggagatccactccctgggactgctaggcatagagagttctatcct
gaaggcgtggctgatattcttaagggagaatggattttatctggaagagatgtttgcaat
gactcagaagtgcttcatctttatgtgtatgctgttaaatgtgtaaatattggctcttca
aaagatccgttcttgactcaagtttcagattttgcattactttttggcaatgagctggat
gcagaggtgttatcgatgtcgatggatctatttgtcgctcgaaccatgagtacaaaggca
tctcttgtcttcagggggttaatggatatcactgaaagtcagttggcctcccttaagagt
tttcatgtaagattgatgagcattgtactggacgtggatgttgaaccttccactactcct
tgggatcctacaaaggcatatttgtttgtccccgtggttggcgataaatctttagatcct
atgagagaaattgactgggatctgattgaaaatattattaatacagatgcatggaacaat
ccccttcagaaagctcgaccagatgtctatcttggcacaaatgagaggacactgggtgga
gacagaagggagtatgggtttgggaaattgcgtaatgggatggcttttggacaaaaatct
catcccacctatggaatcagaggagccgtggcacagtttgatgttgtgaaagcttctgga
ctggttcctaatcgggatggtatggaattgcaagagcatgtggatttgaccaaaggtaaa
ctgatgttggctgatacttgtatgagtgcggaagatttggtaggcagaattgtcacagct
gttcactcgggtaagaggttttatgtggactcagtacgctatgatatgactgcggagaat
tctttcccgaggaaagaaggatatcttggtcctctggagtacagctcatatgctgattac
tacaagcaaaagtatggagttgagttgatctataagcaacaaccattgataagaggacgg
ggtgtctcatattgcaagaatctcctgtcccctcggtttgaacacaaggaagcacctgaa
gatgaaactgaagagaatcttgacaaaacatactatgtgtttcttcctgctgagctgtgc
ttagtacacccacttcctggatcagttgttcgtggtgcccagagactgccctctgtaatg
aggagggttgaaagcatgctgcttgcaattcagctcaaagataaaataaactatactgtc
cctgcttcgaagatcttggaagccttgactgctgcttcatgccaagagactttctgttat
gaacgggcagagcttctgggagatgcttacctgaaatgggtggttagtcgatttcttttt
cttaaatacccccagaaacatgagggtcagcttactaggatgagacaacaaatggtgagt
aacatggtgttatatcactatgctttgagtaaaggacttcaatcatatatccaagcagat
cgctttgctccatctcgatgggctgctcctggggtacagcctgtctttgatgaggatacc
aaggatggagaatcatccttttttgatcaggacgggtcacgtgctgagactgaacatggg
atggatctgtgcagtgatggatatgaaaatgatgaaatggaggatggtgagcttgagagt
gactcgagttcatatagagttctctccagcaagacgctcgcagatgttgttgaagcactt
attggagtttattatgttgaaggtgggaagcatgctgcgaatcatctcatgaaatggatt
ggcattcaggtagagtttgatgcggatgagatagagtgcataacaaggccatcgaatgtt
ccggacagcatacttagaagtgtaaactttgatgccttagaaggagctttgaacatcaag
tttaatgacaggggcctgttggtggaagctattactcatgcttcacgaccatcttctgga
gtatcctgctatcagcgtctggagtttgttggtgatgctgtcttagatcatctcataaca
aagcatttgtttttcacgtacactgatctgcccccagggcgcttgactgacctgcgagct
gctgctgtaaacaatgaaaattttgctcgtgttgctgtcaaacacagtctccacttgcac
cttcggcatgggtcaagtgcccttgataagcagattcgggactttgtgaaagaagttcat
gatgaattgtcaaaacccgggttcaactcgtttggtttgggtgactgcaaagctccaaaa
gttcttggtgacattgttgaatccattgctggtgccatttttcttgacagcgaacgtgat
acttcagctgtttggacggtgtttcaacctctcttgcaaccaatggttaccccagagaca
ctcccaatgcatcctgtgcgggagctgcaagaacgatgtcagcaacaggcggaaggcttg
gaatacaaggcaagtcgaaatggcaattttgctactgttgaagtctttattgatggcgtc
cagataggaattgctcagaatccgcaaaagaagatggcacagaaactagctgctagaaat
gcactcgctgcattgaaagagaaggaaacagctgaagccaaggagaaaggtgatgaaaat
gggaagaaaaagaagaatgggaaccaaacttttactaggcaaacattgaatgatatctgc
ctgcgtagaaattggcctatgccatcctatcggtgtgtgagcgagggtggccctgcacat
gcgaagcggtttacatttgctgtaagggtgaatactacggacaaaggagccacagatgaa
tgtgtgggagagcctatgcctagtgtcaaaaaggccaaggattctgccgctgctcttctc
ttggaacttctaaataaattatactcataa
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