Corylus avellana (European hazelnut): 132189043
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Entry
132189043 CDS
T09426
Name
(RefSeq) tetratricopeptide repeat protein SKI3
KO
K12600
superkiller protein 3
Organism
cave
Corylus avellana (European hazelnut)
Pathway
cave03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cave00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
132189043
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cave03019
]
132189043
Messenger RNA biogenesis [BR:
cave03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
132189043
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_11
TPR_2
TPR_16
TPR_17
TPR_14
TPR_8
TPR_19
TPR_CcmH_CycH
TPR_9
TPR_12
TPR_6
TPR_7
BTAD
TPR_15
TPR_10
DUF6584
NatA_aux_su
Motif
Other DBs
NCBI-GeneID:
132189043
NCBI-ProteinID:
XP_059459502
LinkDB
All DBs
Position
ca8:25608558..25618700
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AA seq
1183 aa
AA seq
DB search
MEKTEEESEEAVLKRLEESVNACPDDPSLHFDLGVLLWEKGGKSEKEKAAEHFVISAKLH
PQNGAAFRYLGLYYAQVSADTQRALKCYQRAVSLNPDDSHSGEALCDLLDQQGKESLEAS
LCREASAKSPKAFWAFRRLGFLQLHQNKWSEAVQSLQHAIRGYPTSADLWQALGLAYQRL
GRFTAAVKSYGRAIELDDTDVFALVESGNIFLMLGSFKKGVEQFLQALDISPQSVSAQYG
LASGLLGLAEECINLGAFRWGASLLEEASSVAKAGTHLAGNISCIWKLHGDIQLAYAKCF
PWTEQGQGLEFDAEAFNASILYWKQTCCIAAVSAKRSYQRALHLAPWQANIYTDIAIASD
LISSLNKSYGNNLNAWQLSAKMALGALLLEGDNNEFWVALGCLSDHNALKQHALIRGLQL
DVSLAVGWAYLGKLYRKEGAKQLAKQAFDCARSIDPSLSLPWAGMSADFHARNLAPDEAF
ESCLRAVQILPLAEFQIGLAKLALLSGHLSSSRVHGAILQAVQHAPHSPESHNLNGLVCE
SRFDYQSAAAAYRRARCAISSCSASISKSYTRDISLNLARSLSKAGNATDALLECEDLKK
EGMLDAEGLQIYAFSLWQLGKQDLALSFVRNLAASVSTMEQKFVVASVSFICRMLYCIPG
LDSAINSILKMPEKLFQNSRVSFIVSAIHALDQSNRLESVVSSSRSFVQSPVEVAGMHFL
IALSKLVKQGTEFCLGVQSGIAHLRKALHMFPNSSLMRNLLGYLLLSSKEWNDTHVATRC
CNIDASDSANKVGLKSASEILGAGAVACYAIGNKNRKFSFPTCTYQCLKEPGAIQQLQKC
LRQEPWNHNFRYLLILNFIQKAREERFPHNLCVVLKRLISVALSSDLYTKTDMSYQKFQL
LLCASEISLQSEDNIGCINHAKNASTLLLPDDYLFFSHLQLCRAYAAESDSLNLQKEYIR
CLELKTDYHIGWICLKFIELRYNVQNDTNILELSFKESSKERNYSWNMGMAVFNLVWGLI
SLRNEDFLSAEEFLAQACSLAGAESCLLLCHGATCMELARKLCDSKFLLLAVKSLTKAQE
TSVIPLPIVSALLAQAEGSLNSKEKWEKNIRLEWFSWPPEMRPAELFFQMHLLARQSKSV
SISSSNVELCQSPQRWILRAIHTNPSCTRYWKVLGRFDLIQRS
NT seq
3552 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaaacggaagaagaaagcgaagaagcggttctgaaacggttggaggagtcggtg
aacgcgtgtcccgatgacccctctcttcattttgatcttggagtcctgttgtgggagaaa
ggaggaaaatcggagaaggaaaaagcggcggagcacttcgtaatatcggccaaactgcat
cctcaaaatggtgccgcgttcagatatttggggctttattacgcccaagtttccgctgat
acccagcgtgctctcaagtgttatcagagagctgtctccctcaatcccgatgattcccat
tctggggaggcgctgtgtgatttgttggaccaacaaggaaaggagagcttggaagcgtcg
ctgtgcagagaagcttctgcaaagtcacctaaggctttttgggcttttcggagattgggt
ttcttgcagcttcatcaaaacaagtggtctgaagctgtacagagtcttcaacatgccatt
cggggctatcctacatctgctgatttatggcaagctctgggtcttgcctaccagcgtttg
ggcaggtttactgccgctgtgaagtcttatgggcgagccatcgaattggatgatacagat
gtatttgcattggttgaaagcggaaacatctttttgatgcttggttcctttaaaaagggg
gttgagcaatttctgcaagctctagatatttcacctcagagtgtgtctgcacaatatggg
cttgcatcagggctacttggtttggctgaggaatgcattaatttgggagctttcagatgg
ggggcttcattattagaggaggcatctagtgttgcaaaagcgggtactcatttggctgga
aatatatcatgtatttggaagttgcatggtgatattcagcttgcatatgcaaagtgtttt
ccatggacggagcaaggccagggtttagaatttgatgcagaagcttttaatgcttccatc
ctctactggaagcagacctgctgtatagctgccgtatctgccaaacgttcttatcagcgg
gctttgcacttggccccatggcaagctaatatttatacagacattgcaatagcttcagat
cttatatcctctttgaacaagagttatggaaacaacttaaatgcttggcagctatcagcg
aagatggctttgggggccttgttacttgagggtgacaataatgagttttgggtggccttg
ggatgcttgtcagaccataatgcattgaaacaacatgccttaatcaggggattacaactg
gatgtttctctagctgttggttgggcataccttgggaagctttatcgaaaagagggtgca
aaacaattggcaaagcaagcatttgattgtgctagaagtatagatccttcgctttcatta
ccatgggcaggcatgtcagctgattttcatgctaggaatcttgcaccagatgaggctttt
gagagctgcttaagagctgtgcagatattacctcttgcagaattccaaattggtcttgca
aagcttgctctgctctcaggacatctctcatcttcacgggttcatggagctatcctgcag
gctgtgcagcatgcacctcactcccctgaatcacataatttaaatgggctggtttgtgag
tcacgatttgattatcaatctgctgctgctgcttatcggcgggcacgctgcgcaatcagc
agttgttcagccagtatctcaaaatcttataccagagatatatctcttaatttggcaaga
tctcttagtaaggcagggaatgctacagatgctttgctggaatgtgaagatttaaagaaa
gaaggtatgcttgatgcggaaggtttgcaaatatatgctttctctttatggcaacttggc
aaacaggacttggctctttcttttgtgagaaatctggctgcgagtgtttctactatggaa
caaaaatttgttgtggcctctgttagtttcatttgtagaatgctgtattgcatccctggt
ctggattcagcaattaatagtattctgaaaatgcccgagaaactttttcagaattcaaga
gttagttttatagtgtctgctattcatgctcttgatcaaagtaatcggcttgagtcagtt
gtttcaagcagtcgatcgtttgttcaatctcccgtagaggttgctggaatgcacttcttg
atagcacttagtaaacttgtcaaacaaggaacagaattctgccttggagttcagagtgga
attgctcatcttagaaaagctcttcacatgttccctaacagcagtttgatgaggaatcta
cttggttatcttttgttatcaagtaaggaatggaatgatactcatgttgcaaccaggtgt
tgcaatatagatgcttctgactctgcaaataaagtaggtttaaaatcagcaagcgaaatc
cttggtgctggagctgttgcttgctatgccattggcaataagaatcgaaagttttctttt
ccaacatgtacataccagtgcctgaaagaacctggagctatccaacagctgcagaaatgc
ttacgtcaagaaccatggaatcataattttcggtacttgcttatactcaattttatacaa
aaggcgcgtgaagaaagatttcctcataatctctgtgttgtactcaagcggctaatatct
gtagctctttccagtgatttgtacacaaagacagacatgtcttatcaaaaattccaactt
ttactttgtgcttctgagatcagcttgcagagtgaggataacattggctgcatcaaccat
gccaaaaatgcttctacacttttgcttcctgatgattatctcttcttttcgcacttacaa
ttgtgccgtgcctatgctgcagaaagtgatagtttaaatcttcagaaagagtatataaga
tgcttggagctcaagacagattatcatattggttggatatgtcttaaatttatagaatta
cgatataatgtgcaaaatgatactaacatcttagaattgagcttcaaagaatcctcaaaa
gagaggaattattcatggaatatggggatggctgtgtttaatctggtgtggggtctgatc
tctctacggaacgaagatttcctttctgcagaagagtttcttgcacaagcttgttctttg
gctggtgctgagagctgcctccttttatgtcatggtgccacctgcatggagcttgccagg
aagttgtgtgattcaaagttcttgttgcttgctgtaaagagtctcactaaagcacaagaa
acctctgtcattccattacctattgtctcggcattgctggctcaggcagagggaagcctc
aattctaaagaaaagtgggagaaaaacatccgtcttgaatggttttcttggccaccagaa
atgaggcctgcagaactcttctttcaaatgcatttgcttgcaagacaatcgaaatcggtc
tccatctcttcatccaatgtggagttgtgtcagagtccacagagatggattcttcgggca
atccatacaaacccttcttgtaccagatattggaaggttttgggaaggtttgacttgatt
cagagaagttag
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