Corylus avellana (European hazelnut): 132189249
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Entry
132189249 CDS
T09426
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
cave
Corylus avellana (European hazelnut)
Pathway
cave03013
Nucleocytoplasmic transport
cave03015
mRNA surveillance pathway
cave03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cave00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132189249
09122 Translation
03013 Nucleocytoplasmic transport
132189249
03015 mRNA surveillance pathway
132189249
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cave03019
]
132189249
03041 Spliceosome [BR:
cave03041
]
132189249
Enzymes [BR:
cave01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
132189249
Messenger RNA biogenesis [BR:
cave03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
132189249
Spliceosome [BR:
cave03041
]
Complex C
Other components
EJC/TREX
132189249
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
132189249
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
132189249
NCBI-ProteinID:
XP_059459882
LinkDB
All DBs
Position
ca8:3893669..3900290
Genome browser
AA seq
427 aa
AA seq
DB search
MGETRETDGYEEELVDYDDEEAHAPASALKVNGEATKKGYVGIHSSGFRDFLLKPELLRA
IVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVTGQVSAIVL
CHTRELAYQICHEFERFSTYLTDLKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRILAL
AREKDLSLKNVRHFILDECDKMLESLDMRKDVQEIFKMTPHDKQVMMFSATLSKEIRPVC
KRFMQEPMEIYVDDEAKLTLHGLVQHYIKLSESEKNRKLNDLLDALDFNQVVIFVKSVSR
AAELNKLLKECNFPSICIHSGMSQEERLTRYKGFKEGQSRILVATDLVGRGIDIERVNIV
INYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSEVLNNVQMRFEVDIKELPEQID
TSTYMPS
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgggagaaaccagggaaaccgatgggtacgaggaggagcttgtagactacgatgacgaa
gaagcccatgcaccggcctcggcgctcaaagttaacggcgaagccaccaagaagggctat
gttggaattcacagttcagggttcagagacttccttttgaagccagagcttcttcgagct
attgtggactcaggatttgagcatccttccgaagtgcaacatgaatgtattcctcaagct
atcctgggtatggatgtcatttgccaagcgaagtctggaatggggaaaactgctgttttt
gttctttcaactttgcagcagattgaacctgttactggacaagtttctgcaattgttctg
tgtcatacaagggagttggcttaccagatttgtcatgagttcgagaggttcagtacttac
ttaaccgatctcaaggttgctgtcttctacggcggtgtcaatatcaaagttcacaaggat
ttgctgaaaaatgagtgcccccatattgttgttggaacgcctggaagaatattggcattg
gcaagagagaaggatctctctttgaagaatgtgaggcattttattctggatgaatgtgac
aaaatgcttgaatcacttgacatgaggaaagatgtgcaggagatcttcaagatgactcct
catgataaacaagttatgatgttttctgcaacactcagcaaagaaatccgcccagtttgc
aagagatttatgcaagaaccaatggaaatttatgttgatgacgaggccaagttgaccctt
catggtcttgttcagcactacatcaaattgagcgagtcggagaaaaaccgcaagttgaat
gacctccttgatgcgttggactttaatcaagttgttatctttgtcaaaagtgtcagtaga
gcggctgagctgaacaagctactgaaggagtgtaatttcccctctatatgcatccattct
gggatgtcccaagaggaaaggttgacacgctataagggtttcaaggaggggcagtcgagg
attcttgtggccacagatttggttggtagggggatagacattgagcgtgttaacattgtc
attaattatgacatgccagattcagcagacacttacttgcacagggttggtagggctggt
cggtttggcaccaaagggcttgcaattacattcgtttcatctgcatctgactcggaggtt
ctcaataatgttcagatgaggtttgaggtggatataaaagaacttcctgagcagattgat
acctctacatacatgccctcgtag
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