Corylus avellana (European hazelnut): 132190338
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Entry
132190338 CDS
T09426
Name
(RefSeq) RNA polymerase sigma factor sigC isoform X1
KO
K03093
RNA polymerase sigma-I factor
Organism
cave
Corylus avellana (European hazelnut)
Brite
KEGG Orthology (KO) [BR:
cave00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cave03021
]
132190338
Transcription machinery [BR:
cave03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
132190338
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r3
DASH_Spc19
Motif
Other DBs
NCBI-GeneID:
132190338
NCBI-ProteinID:
XP_059461279
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Position
ca8:complement(14042828..14055300)
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AA seq
541 aa
AA seq
DB search
MGLGFRLNLKWRFPTQSHSLTNSPFRISSSSYVRGKEASFNLTRQSFVSVISDESEASYK
DPLKAYMCSPAASKFSENDFSEMEDKKVPVKEDKCTSSTSLKVYRTAHFKLLMENTHVLE
KTFVDSDNLGLERDILLQLGRLGAINLFNTCLSRTLKISNVLDLSDVPTEHVGEHKMKSE
VDDHIGKVIVHSGKMKERKSRRERTLKNASEISFLSMPSKTIEKRFGKPTVSSVKRASRS
RGRRLKVTRNEAEMSRGVRVVADLERIRRTLEEETGRVASLSCWAEAAGLDEKVLQQHLH
YGWYCRDELIRSTRPLVLYLARNYRGQGIALEDLFQAGNLGILQGAERFDHTRGYRFSTY
VQYWIRKSMSRMVAQHARGIQIPCTLSSTINKIQKARKALYRSHRKYPDDDEIAKHTGLS
LAKIRSASKCFRVVGSIDQKMGEYMQYREVTPDMSIRSPEESVMRQHMRKDIHNLLKSLD
SRERQVLFLRYGLEDYQPKSLADTGKLLQVTKEWIRKVEKKALTKLRDEDIRRDLSHFLD
I
NT seq
1626 nt
NT seq
+upstream
nt +downstream
nt
atgggtctcggtttcaggctaaatctcaagtggcgttttccgactcagtcccattctctc
accaattcacccttcaggatttcttcttcttcttatgttagaggcaaggaggcttctttc
aacttgacaaggcagtctttcgtgtctgttatttctgatgagagtgaggcttcttacaaa
gatcctctgaaagcatacatgtgttcacctgctgcttcaaaattctcggagaatgatttt
tcagaaatggaagacaagaaggtgcctgttaaagaggacaaatgtacttcctccacgagc
ttaaaggtgtacaggacagcacatttcaagttgttaatggaaaatactcacgttttagag
aaaacttttgttgattcagacaacctagggttagaaagagatattcttctgcagctaggg
agactcggagctataaacttattcaatacctgtctatcaaggacccttaaaatctcaaat
gttttggatttgtctgatgtgcctactgagcatgttggagagcacaagatgaaaagcgaa
gtagatgatcatataggaaaagttattgttcactctgggaaaatgaaagaaagaaaatca
agaagagagagaacattgaaaaatgccagtgaaatttcttttctgtcaatgccctcaaaa
accattgagaaacgttttggaaagcctaccgtttcatctgtaaaaagagcatcaaggtct
agaggtagaaggctaaaggttaccaggaatgaggctgaaatgtcaaggggggttagggtg
gttgcggacttggagagaatcagaagaactttggaagaggaaactgggcgggtagccagc
ttgagttgctgggcagaagcagctggacttgatgaaaaggtgttgcagcagcatttgcat
tatggttggtattgcagggatgagcttatacggagtactcgccccttagttctatacctt
gcaagaaactacagaggtcaaggaatagctttggaagacttatttcaggccggaaatctg
ggaatcctccaaggtgctgaaaggtttgaccataccaggggttaccgattttcaacctat
gtccagtactggataaggaaatcaatgtcaagaatggtagcacagcatgctaggggaatc
caaattccttgcacattaagcagcacaataaataagatacagaaagctcgaaaagctctt
tacagaagccacaggaaatacccagatgatgatgaaattgcaaagcacactggtctttct
ttggctaaaatcagatcggctagtaaatgcttcagagttgtgggttcaattgaccagaaa
atgggagagtacatgcaatatagggaagttactcctgatatgtcaataaggagccctgaa
gaaagtgtgatgaggcaacacatgagaaaagacatccacaatcttttgaaaagcttggat
tcaagagagagacaagtgttgttcctgaggtatggacttgaggactaccagcccaaatca
cttgcggatacgggaaagcttctccaagtcaccaaggagtggatacggaaggttgagaag
aaagctctgacaaagcttagggatgaagatatccgcagagatttaagccattttttggat
atctag
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