Corylus avellana (European hazelnut): 132191372
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Entry
132191372 CDS
T09426
Name
(RefSeq) polyadenylation and cleavage factor homolog 4
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
cave
Corylus avellana (European hazelnut)
Pathway
cave03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cave00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
132191372
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cave03021
]
132191372
03019 Messenger RNA biogenesis [BR:
cave03019
]
132191372
Transcription machinery [BR:
cave03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
132191372
Messenger RNA biogenesis [BR:
cave03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
132191372
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
Motif
Other DBs
NCBI-GeneID:
132191372
NCBI-ProteinID:
XP_059462323
LinkDB
All DBs
Position
ca9:1537258..1545930
Genome browser
AA seq
1069 aa
AA seq
DB search
MVMEMESSRRSFDRSREPGLKKPRLTEELDRGPNPNPIGRPFVRPVVVHPVRFRASDRDS
ERSDRGGYQPQPPQHQELVTQYQTALAELTFNSKPIITNLTIIAGENLVAAKAIAATVCA
NILEVPNEQKLPSLYLLDSIVKNIGGDYIKYFAARLHEVFCKAYRQVDPSVHSSMRHLFG
TWKGVFPLQALQMIEKELGFTPIINGSSSAATTTAKPDSQSQRPPHSIHVNPKYLERQQR
LQQSSKRPIREAPSESVHEKNIGSPYGDYEYGSDLSRNSGSGAGRTGGRIEQGHDKPSYG
TGGSVAETISSQKNGFNIKHGFPNYRAPKPAYADAHLKPTQSIANRSGSAMSSSWKNSEE
EEFMWDDMNSRLTDQHASNVSNDSSKDHWTTDDSEKLGFEYHLRKPHSLADVGSKVNKEA
SGNLLYNDQKELTPFGHRMSSSWPLQESHSIDGVIRNSSHSEAYATTLSGSSASVASSLS
RMGGRLPMRPSHTGASGLGGVTTAVSGSSGSVGQQRFQSLGAASPSAQSPMRQYPSSPSL
TVQPSHHQSQSLTEQDHPQTQSLPRPDLKSSQFLGQLNVGPLNQYTQESSPLEPPIIQLG
LLQKLQPRGVRASSPSVPSFQPRHHDLPQTDSAQAQPSGEILKSILPPVSNFVTPSTMGN
SASDHSDTLPAESSGQSSTSSLLAAVMKSGILSNNSITASLPNLSVQGMGQVPSQSGIQP
PLPSGPPPTQFTSSGPSIVSTTSLSSSHNNSPAPANLSQGKVEPPLPPGPPPSSLAGSAS
TQTSSAMKDASNPISNLLSSLVAKGLISASKTEPPTPVPTHTPNKSQNKSLGITTTSSVS
VSSVPDYSDTPVSITRDEVSFPVPSNESSVALPQSAAVEIENLIGFKFKPDVIREFHPSV
ISALFDDLPHQCSVCGLRLQLQEHLDRHLEWHALRKPEPIGLISGSRRWYANSSDWVAGK
PGLTSGVVSAGVADESSKTMVKSEPMVPADESQCACILCGEVFEDFYSQERGEWMFKGAA
YVTIPSRDDEIGTSNDSAAKGPVVHANCMSESSIHDLGLARGIKMEKDV
NT seq
3210 nt
NT seq
+upstream
nt +downstream
nt
atggtaatggaaatggagagctcacgtagatccttcgatagatcgagagaaccgggcttg
aagaagccgcgattaaccgaagagctcgaccgtggtccgaacccgaacccgatcggccgg
ccttttgtgagaccagtggttgtgcatccggtgaggttccgagcgagcgatagggattcg
gagaggagtgaccgggggggatatcagccacagccgccgcagcatcaggagctagtgacc
cagtatcagaccgcgctagctgagctcacgttcaattcaaagccgattatcactaacttg
actataatcgccggtgagaacctcgttgcagcgaaggcgattgccgccactgtctgtgcc
aacattctcgaggttcctaatgagcaaaagttgccgtcgctctatcttttagacagtatc
gtaaagaatattggtggggattacataaaatactttgctgctagactacatgaggttttc
tgcaaggcatataggcaagtagacccttctgttcattcaagtatgcggcatctttttgga
acttggaaaggagtcttccctcttcaggcacttcagatgattgagaaagaacttggcttc
actcccatcatcaatggttcatcttcggcagctacaacaacagctaaaccagattctcag
tctcaacgcccaccgcatagcattcatgttaatcctaagtatttagaaaggcagcagcgc
cttcagcagtccagcaagcgtccgattagagaggcacctagtgaatctgttcatgagaag
aatattggttctccatatggagactatgaatatggttctgatctttcaaggaattcaggc
tcgggagctggaagaactggtgggagaattgagcaaggacatgacaaaccttcgtatgga
actggaggcagtgttgcagagacaatatctagccaaaagaatggtttcaatatcaaacat
ggatttccaaattaccgagcacccaaacctgcatatgctgatgcacatctaaagccaaca
cagagtattgcaaataggagtggcagtgcgatgtctagtagctggaagaattctgaggaa
gaggagttcatgtgggatgatatgaactccagattaacggatcagcatgcatccaatgtc
tctaatgactcaagcaaagatcattggactactgatgattcagaaaagttggggttcgaa
taccaccttcgaaaaccacatagtttagctgatgttgggtcaaaggtcaataaggaagct
tccggcaatttgctatacaacgaccagaaagagttaactccttttgggcaccggatgtca
tcatcttggccattgcaagaatcacattccattgatggggtgatccgtaattcaagccat
tcagaagcctatgccaccactctcagtgggtcatcggcaagtgtagcttcttcactatca
aggatgggaggtcgactgccgatgcggccatcacatactggagcatcaggtttggggggt
gtaacaactgctgtatcggggtcctctggatctgtagggcagcaacggtttcagtctctg
ggagcagcatcaccatctgcacagtcacccatgcgccagtatccttcgtcaccttcgtta
acagtgcaaccttcccatcatcaatcacaaagtttgactgagcaggaccatccacagact
cagtcactgcctcggcctgatttaaagtcttcacaatttttggggcagttgaatgtaggg
cccctcaaccaatatactcaggaatcctcacctctcgagcctcctatcattcagctggga
ctcttgcaaaagttacagcctcggggtgtacgagcttcatctccttcagtgccttctttt
cagccaaggcaccatgatctgccacaaactgactctgcacaggctcaaccatctggtgag
attctaaagtctatcctgcctcctgtctcaaattttgtaactccctcaacaatggggaat
tctgcatcagaccattcagatactcttcctgcagaatcttcaggacaatcaagtacatct
agtttgttggctgctgttatgaagagtggaattttatctaacaattcaattacagctagc
ctacctaatctgagtgtccagggcatggggcaagttccatcacagtcaggtattcagcct
cccctgccaagtgggcctccgccgacgcagtttacatcctcagggcccagtattgtgtct
acaacttcattaagttcttcccataataactcaccagctccggcaaatctatctcaagga
aaggtagaaccacctctgccacctggtccaccaccttcatctcttgcaggtagtgcatcc
acacaaacctcaagtgccatgaaggatgcctcaaatccaatttcaaaccttttgagctca
ttagttgcaaagggtttgatatcagcatcaaagactgagccaccaactcctgtgccaact
cataccccgaataaatcgcaaaacaagagcctgggcattactaccactagctctgtatca
gtttcttcggtacccgattactcagacacccctgtttcaattactagggatgaggtatct
tttccagtaccttccaatgaaagctctgttgcgttacctcaatctgccgcagtggaaata
gaaaacctcataggtttcaagtttaagccagatgtcatccgagaatttcatccatctgtg
atcagcgcactatttgatgaccttccacatcagtgcagtgtttgtggtcttcgacttcag
cttcaagagcatcttgatagacacttggagtggcatgctcttagaaaacctgaacctatt
ggtttaattagtggatcaaggagatggtatgcaaactcaagtgactgggttgctgggaag
ccaggacttacatctggggttgtgtctgctggtgtggctgacgagtctagtaagacaatg
gtcaagagtgagccgatggttcctgcagatgagagtcaatgtgcatgtattttgtgtggg
gaggtttttgaagatttttacagtcaagaaaggggtgagtggatgttcaaaggggcagcc
tacgtgactatcccatctagggatgatgagataggaacttcaaatgacagtgctgccaag
ggtcctgttgtgcatgcaaattgtatgtcagaaagttcaattcatgacttgggactggct
agaggtatcaaaatggaaaaggatgtataa
DBGET
integrated database retrieval system
