Corylus avellana (European hazelnut): 132191387
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Entry
132191387 CDS
T09426
Name
(RefSeq) general negative regulator of transcription subunit 3 isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
cave
Corylus avellana (European hazelnut)
Pathway
cave03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cave00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
132191387
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cave03019
]
132191387
Messenger RNA biogenesis [BR:
cave03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
132191387
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
132191387
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
Motif
Other DBs
NCBI-GeneID:
132191387
NCBI-ProteinID:
XP_059462358
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Position
ca9:160262..180044
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AA seq
897 aa
AA seq
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MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK
TDPKEKAKSETRDWLNNVVSELESQIDSFEAEIEGLSVKKGKTRPPRLTHLETSITRHKA
HIMKLELILRLLDNDELSPEQVNDVKDFLEDYVDRNQDDFEDFSDVDELYNTLPLDKVES
LEDLVVIGPPSLVKGAPVLSLKTSLVASASQIPATGASNLQQSTVPEQVEDTAPQDINSD
TVPRTPPPKSSVLASSAASTPVGSHATANVSAHNLSSVSTASASLPVSGSIRVVTENTGT
TNSSSALSLSPSAREEDSLPGRRSSPSLSDAGLVRGIGRGGLSSQPSASIPLSASNVVPG
NGAVGAVPSASDMTKRNILVADERLGSSGMVQPLVSPLSNRMILPQGAKANDGTGAIDSS
NVGEPPAIAAGRVFSPPMVPGMQWRPGSAFQNQNEAGQFRGRTEIAPDQREKFLQRLQQV
QQQGHSTLLSMPTLAAGNHKQFSSQQQNPLLQQFNSQSTSASSQAGLGLGVQAPGLNNVT
PATLQQQNNSIHQQSNQQALMSSGPKDADVGAAKVEEQQQQQNLPDDSIVDSTSGSGLGK
NLMNEDDLKASYAIDSPAGVSGSLTEPAQVPRDIDLSPGQPLQSNQPSGSLGVIGRRSVS
DLGAIGDSLSGSTLNSGGMHDQSYNLQMLEAAYYKLPQPKDSERARSYTPRHPAITPSSY
PQVQAPIVNNPAFWERLGLEVNGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHKKYNT
WFQRHEEPKVATDEYEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELMV
NT seq
2694 nt
NT seq
+upstream
nt +downstream
nt
atgggagccagccgtaagcttcagggagagatcgatcgggttctcaagaaggtccaggaa
ggcgttgatgtcttcgacagtatctggaacaaggtttacgatacggacaatgcgaaccag
aaggagaagttcgaggcggacttgaagaaggagatcaagaaactccagcggtacagggac
caaatcaagacatggatccagtccagcgagatcaaagacaagaaggttagtgcctcttat
gagcaggctttggtggatgctcgtaaacttattgaacgtgaaatggaaagatttaagatc
tgcgaaaaggagactaagacaaaagcattctctaaagaaggactaggccaacaacctaaa
actgatccaaaggagaaggctaaatcagagacaagggattggttgaacaatgtggtttca
gagttggagtctcagattgatagctttgaagcggagattgaggggctatctgttaagaag
ggaaagactaggccgccaagactgacacatttagagacatctatcacccggcacaaagct
catataatgaagttggaactgatcttgaggctcctggataatgatgaactgagtcccgag
caggttaatgatgttaaagacttcctggaagattatgtggaccgaaatcaggacgatttt
gaagactttagtgatgttgatgagctttacaacactttaccactagacaaggtggagtct
cttgaagacctggttgtaattggtcctcccagtcttgttaagggggcacctgttcttagc
ttgaagacatctttggtggcatcagcctctcaaattcctgccactggtgcgtctaatctt
cagcagagtactgtcccagagcaagttgaagatacggctccccaggacattaattctgat
actgttccaagaactccaccgcccaaaagtagtgtacttgcttcttctgcagcatctaca
ccagttgggagtcatgcgacagctaatgtttctgctcataatttgtctagtgtctccact
gcttcagcgagccttccagtttcaggctctattcgagttgtcacagagaacactggtact
accaattcttcttctgctttgagtctgtccccttctgcaagggaagaagatagtcttcct
ggccgcagatcatctccatctctttctgatgctggacttgtaaggggaattggtagaggt
ggcctctccagccaaccgtcagctagtatccctcttagtgctagcaatgtagttcctgga
aatggagctgttggtgcagttccttcagcctcagacatgacgaagagaaacattttagta
gcggatgagagacttgggagtagtggcatggtgcagcctttggtttcccctctaagtaat
agaatgattttgcctcagggtgccaaggcaaacgatggaactggtgcgattgattctagt
aatgttggtgagcctccagctatagctgctggcagagttttttcccctcctatggtccct
ggtatgcaatggaggcctggaagtgcctttcagaaccagaatgaagcggggcagtttcgt
ggaagaactgaaattgcacctgatcagagggagaagtttttgcaacggctccaacaggtg
cagcaacaaggtcacagcacccttcttagcatgccaactcttgctgcaggaaatcataag
cagttttcttcacaacagcaaaacccactcttgcagcagtttaattctcaaagcacatct
gcctcttctcaagctggtctgggacttggagtccaggcacctggtctcaataatgttact
cctgccaccttacagcaacagaataattccatccatcaacagtctaatcaacaggcattg
atgtcaagtggtccaaaagatgctgatgttggtgctgcaaaagttgaggagcagcagcaa
caacagaatttacctgatgattcaattgttgactctacaagtggttctgggcttggaaag
aatctcatgaatgaggatgatttgaaagcctcttatgcaatagatagtcctgcaggggta
tctggctctttgaccgagcctgctcaagtccctagagatattgatctctctcctgggcaa
cctttacaatcaaatcaaccttctgggagccttggtgttattggccgaagaagtgtttct
gaccttggtgccattggggatagcctcagtggatcaactctgaattctgggggaatgcat
gatcagtcatacaatttgcagatgcttgaggctgcttattataaacttcctcaacccaaa
gattctgaacgtgcaagaagttatactccacggcaccctgcaattactccttctagctat
cctcaagtacaggcgcctattgttaataatcctgccttctgggaacgactaggtctggaa
gttaatggcactgacactctcttctttgcattttactatcagcagaacacttatcaacaa
tatttggctgcaaaagagttgaagaagcaatcttggagataccacaagaaatacaataca
tggtttcaacggcatgaggagcccaaagttgccacagatgaatatgaacaggggacgtat
gtgtactttgattttcatattgccaatgatgacctgcagcatggatggtgtcagagaatc
aagacagaattcacttttgagtacaactatcttgaagatgaacttatggtatag
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