Corylus avellana (European hazelnut): 132191403
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Entry
132191403 CDS
T09426
Name
(RefSeq) uncharacterized protein LOC132191403 isoform X1
KO
K06100
symplekin
Organism
cave
Corylus avellana (European hazelnut)
Pathway
cave03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cave00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
132191403
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cave03021
]
132191403
03019 Messenger RNA biogenesis [BR:
cave03019
]
132191403
Transcription machinery [BR:
cave03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
132191403
Messenger RNA biogenesis [BR:
cave03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
132191403
U7-dependent histone pre-mRNA processing factors
132191403
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
HEAT_EZ
HEAT_2
mTOR_dom
DUF2031
Motif
Other DBs
NCBI-GeneID:
132191403
NCBI-ProteinID:
XP_059462379
LinkDB
All DBs
Position
ca9:21338848..21351622
Genome browser
AA seq
1347 aa
AA seq
DB search
MVAVMMATNTREKLASLINSVESASDIPSKLEPLRQLKQDLPQQDHVLLSEFLPLFFELK
SDRFSPVRKHVAEIIGEIGLKHVEFLPEIVPELIAVLSDGTPAVARQAIASGIELFRSTL
EKVTIQGLYASELDSALESSWAWMLKFKDKIYSIAFQTGSGGTRLLALKFVEAVILLYTP
DPNGSLEPPPYEGKCVQFNISWIRVGHPLLNVGDLSIEATQSLGLLLDQLRFPTVKSLSN
AETIVLINSFSAIAKQRPAFYGRILPVLLGLEPSSSVINGMHVSAAHHALKNAFLTCLKC
THPGAAPWRDRLVGALGEIKPIGLAEQALQQGCKSNGSLGEGKEDSPVIMEEKPTIKACD
AVDSNLGRKRSGSPDGSDLAEDEDVAEKRARPSPSVSEESTRELDKKITTPQDDIPSTRP
NISRGDGDSGPVQQLVAMFGALVAQGEKAVGSLEILISSISADLLAEVVMANMRYLPPNR
FKAEEDEDSLLNMTIYGSDTQAKYPPSFIANVLSLSSTFPPIASLLDAQQSASSDIVKPH
DEEELVAVADTDLECAGMDHGSDNAISPTGLLASSDVVSSGMEKGCFPIPSDIHDVENLE
SEIPGLDSSAHTDGLSETLVASSLASTDLEEASQEQVTSLGQSPVNLLPSMSTDKSEELS
PKAAVTDVTSLVSSTATSVGLSSHFVLPKMAAPVVYLDDEQKDHLQKLAFMRIVEAYKQV
AVAGGAQIRFSLLANLGVEFPSELDPWKLLQTHILEDYMGHEGHELTLRVLYRLYGEQVE
DRDFFSSTNAASEYEKFLLTVAETLRDSFPPSDKSLSRLLDEAPDLPKSVLKLLESMCSP
GNCDKADELQSGDRVTQGLSAVWRLIMLRPLIRDVCLKIALQSAVHHLEEVRMKAIRLVA
NKLYPLSSIAKQIEDFAKEMLLSIISDDATERTDSEGPVTESQKFSDLEKHVDEHVSVSA
NSKDISSDTLQSGMCQTVSSHSVSEVQRHMSLYFALCTKKHSLFRQIFASYMSMSKTVKQ
TVHRQIPVLVRTMGSSSDLLEIISDPPSGSKNLLMQVLHTLTDGTVPSSELLFTVRKLYD
SKVKDLEILIPILPFLSKDEVKLIFPHVVNLPPDKFQAALARILQGSSHSGPVLTPAEVL
IAIHAIDTDRDGIPLKKVTDACNACFEQRQIFTQQVLAKVLNQLVEQIPLPLLFMRTVLQ
AIGAFPALVGFIMEILSRLVSKEIWKYPKLWVGFMKCALLTKPQSFSVLLKLPPAQLENA
LTRTGALKAPLIAHASQPNIRSSLPRSVLVVLGIAPDSQTSSQAQTTGVAPDSQNSSQPQ
TSEAQTGHTSNSDNVVTEKSKESSGAT
NT seq
4044 nt
NT seq
+upstream
nt +downstream
nt
atggtggcagtgatgatggccacgaacacgagggaaaagctcgcgagtttgataaactcg
gtcgagtcggcctcggatataccgtctaagctcgaacccttgcgccaattgaagcaagat
ttgccccaacaggaccacgtcttgctctcggagttcctgcctctctttttcgagctcaag
tccgaccggttcagtccggttcgtaagcatgttgcagagattattggtgaaattggactt
aagcatgtggaattcttacctgaaattgtgcctgagttgattgctgttttgagtgacggt
acaccggctgttgcacgacaagccatcgctagtgggatcgaattgtttcgttctactctt
gaaaaagtcacaattcagggtctatatgcaagtgagttggacagtgcccttgagtcatca
tgggcgtggatgttgaaattcaaggacaaaatatactcaatagcttttcagacgggaagt
ggtgggacaaggttactggcactgaagtttgttgaagcagtcattcttctttacacaccc
gatcctaatggctctttagagccccctccttatgaaggaaagtgtgtgcaatttaatata
tcttggatacgtgtgggtcaccctttgcttaatgttggagatttgtcaattgaggccact
cagagtttgggtctattgcttgatcaactcaggttcccgacagtgaaatctcttagtaat
gcagaaaccattgtgctcattaacagtttctcggcaattgcaaaacaaaggcctgcattc
tatggacggattctgccagttttacttggtttggaaccctcgagctctgtgatcaatgga
atgcatgtttctgcggcacatcatgctttgaaaaatgccttcctcacctgcttgaaatgt
acacacccgggtgctgctccgtggcgggatcgtttggttggtgccttgggggagattaaa
cccatagggttggcggaacaggctcttcaacaaggttgcaagtctaatggaagtctaggc
gaagggaaagaagattcaccagttattatggaagagaaacccacaattaaagcatgtgat
gctgtggacagtaatttggggagaaaaagatctggatcaccggacggcagtgatctggct
gaagatgaagatgtggcagaaaaacgagcaagaccatcacctagtgtctcagaggaatcg
actagagagttggataagaaaatcacaacacctcaggatgacattccttcaactcgtcca
aacatttccagaggagatggtgattctgggcctgtgcagcagcttgttgctatgtttggt
gcattggttgctcaaggtgaaaaagctgttggctctttggagattcttatctcaagtatc
tctgctgacttgctagctgaggtagtgatggctaatatgcgttacctgcctcccaatcgt
ttcaaagctgaagaagatgaagattcgctgctgaacatgactatttatggcagtgatact
caagctaaatatcctccatcgtttatagcaaatgttctgtcactttctagtactttccca
ccaatagcctcattgttagatgctcaacagtctgcatccagcgatatagtgaaacctcat
gacgaggaagaacttgtggctgtagctgatacagatcttgaatgtgctggtatggaccat
ggatctgataatgcaatttcgcccactggtttactagcttcttctgatgttgtttcatct
ggaatggagaaaggctgctttcctattccatctgatatccatgatgtggagaatctagag
agtgagatacctggcctggattcttctgcgcatactgatggattgtcagagactttggtt
gcttcctctttggcctctactgatttagaagaagccagtcaagagcaagttacaagtttg
ggtcagtcaccagtgaatttacttccatcaatgtctacggacaagtctgaggagcttagc
ccaaaagcagctgttacagatgtcactagcctggtctcgtcaacagcaacttctgttggg
ttgtcttctcattttgtcttgcccaagatggcagcacctgttgtttaccttgatgatgaa
cagaaggatcatttgcagaaattggcttttatgcgtattgttgaggcatataagcaagta
gcagttgctggaggtgcacaaatccgcttttcacttcttgcaaatttaggggttgagttt
ccctcagagttggatccctggaaactgttacagacgcatatattggaagattatatgggt
catgaggggcacgagttgacattgcgtgtcctctacaggttatatggcgagcaagtagag
gaccgcgacttcttttcttctacaaatgcagcttctgaatatgaaaaattccttcttact
gtggcggaaacacttagagattctttcccaccttcagacaaatcattaagtagattgctt
gatgaagctcctgatctgccaaagtcggttttaaaattattagagtccatgtgttctcct
ggaaactgtgacaaagctgatgagttacaaagtggggatcgggttacccaaggtctcagt
gccgtgtggagattgattatgctgaggcctctcattcgagatgtgtgcttgaaaattgct
ttacagagtgcagtccatcacttggaggaagtgcgtatgaaggcaatacgtctggtggca
aacaagctgtaccctttatcatccattgctaaacaaattgaggattttgcaaaggaaatg
ttgctctctataataagtgatgatgcaacagaaagaacagatagtgaaggcccagtcact
gaatcacagaagttttctgatctggaaaaacatgtcgatgaacatgtgtcagtgagtgcc
aacagtaaagacatttcctctgatactcttcaatcgggcatgtgtcaaactgtgtcctcc
cattcagtctccgaggtccagcggcacatgtcactgtattttgcgttgtgtaccaagaag
cactccctttttcgccaaatatttgctagctatatgagcatgtcaaagacagttaagcag
acggttcatcgccagatcccagtactagtccgtactatgggctcttcatcagatcttctt
gaaatcatttcagatcctccaagtggaagcaagaacctactaatgcaggttttgcataca
ctgacagatgggacggttccctcttcagaattattatttaccgttaggaagttatatgat
tccaaagtaaaggatttagagattcttattccgatattaccattcctatcaaaggacgag
gttaagctgatttttccccatgttgtgaatcttccaccagataagttccaagcagcactt
gctcgcatattacagggatcatctcattctggtccagtgctcactccagctgaagtgtta
attgctatccatgcgattgataccgacagagatggaattcccttgaagaaggtcacggac
gcatgcaatgcttgttttgagcagaggcaaatattcacccaacaagtgcttgcaaaggtt
ttgaatcagttggttgagcagattcctcttcctttattgttcatgcggacagtgctacaa
gccataggtgctttcccagcgctggtgggttttataatggagatcctgtctcgtcttgtg
agcaaggagatttggaaatacccaaagttgtgggtaggattcatgaagtgtgcactcctg
acaaagcctcagtcattcagcgtgttgcttaagctacctccagcacagctagaaaatgca
ttgactagaactggagcactaaaagcacctttgattgctcatgctagccaacccaacatc
cgatcttcacttccaagatctgtcttggtggttctgggaattgcaccagattcacaaact
tcaagtcaggcacaaacaacgggagttgccccagattctcagaattcaagccagccgcaa
acaagtgaagctcagactggacatacaagcaactcagataatgtggtgacagagaaatct
aaagaatcatctggggccacctga
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