KEGG   Corylus avellana (European hazelnut): 132191705
Entry
132191705         CDS       T09426                                 
Name
(RefSeq) DNA-directed RNA polymerase V subunit 5A-like
  KO
K03013  DNA-directed RNA polymerases I, II, and III subunit RPABC1
Organism
cave  Corylus avellana (European hazelnut)
Pathway
cave03020  RNA polymerase
cave03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:cave00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    132191705
  09124 Replication and repair
   03420 Nucleotide excision repair
    132191705
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cave03021]
    132191705
   03400 DNA repair and recombination proteins [BR:cave03400]
    132191705
Transcription machinery [BR:cave03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     132191705
  RNA polymerase III system
   RNA polymerase III
     132191705
  RNA polymerase I system
   RNA polymerase I
     132191705
DNA repair and recombination proteins [BR:cave03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      132191705
SSDB
Motif
Pfam: RNA_pol_Rpb5_C RNA_pol_Rpb5_N DUF3221 NA-iREase1 Zf-C2H2_ZNF451_6th NMB0315_dom_I
Other DBs
NCBI-GeneID: 132191705
NCBI-ProteinID: XP_059462780
LinkDB
Position
ca9:3284410..3289074
AA seq 227 aa
MEGNGFEGDLNGEILGPCLSSYVDEGSTESHKYYLARRTVLEMLKDRGYAVPTSEIELSL
KDFRAIHGQNPDLERLRITTNLRADPLKRILVIFCGPSMIKVNSVRSILAQIMNKETLSG
LILIVQNNITNQALKAVDLCKFKVEIFQITDLLVNITKHELKPKHRVLTDQEKKKVLKKY
NIEEKQLPRMLQKDAIARYHGLEKGQVVKVTYSGEITESHVTYRCIW
NT seq 684 nt   +upstreamnt  +downstreamnt
atggaggggaatgggttcgaaggagacttgaacggggagatattgggaccgtgcctgagc
agctatgtggacgaaggaagcacggagagccacaaatactacctggcgcgcagaactgtg
ctggagatgctcaaggacagaggctatgccgtgcccacctcggaaatcgagctctctctc
aaggacttccgagccattcatggccagaaccccgaccttgagcgcctccgaatcaccacc
aaccttcgcgctgaccctttgaaaaggattctggtcattttctgtggacctagtatgata
aaagttaattcggtccgcagcattttagcccagattatgaacaaagagactttaagtggg
ttgatattgatagtgcaaaacaatataacaaaccaagctttaaaagcagtggatctttgc
aaatttaaagttgaaatattccagatcactgacttgcttgttaacattacaaagcatgaa
ttaaagccaaagcatcgtgtactgactgaccaagagaaaaagaaggtcttaaaaaagtac
aatattgaagaaaagcagcttcctcgaatgttacaaaaagatgcaattgcaaggtaccat
ggactagagaaagggcaggttgtgaaagtcacctatagtggtgaaatcaccgagtcgcat
gttacttatcgatgcatctggtga

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