Campylobacter avium: CAV_0784
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Entry
CAV_0784 CDS
T05533
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cavi
Campylobacter avium
Pathway
cavi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cavi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CAV_0784 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cavi03400
]
CAV_0784 (mfd)
Enzymes [BR:
cavi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CAV_0784 (mfd)
DNA repair and recombination proteins [BR:
cavi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CAV_0784 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
UvrB_inter
CarD_TRCF_RID
TRCF
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ASQ30450
UniProt:
A0A222MXN0
LinkDB
All DBs
Position
769321..772260
Genome browser
AA seq
979 aa
AA seq
DB search
MQARLFEFLQEKSASLLLCEDSKEADLLADVCEFLGFKSFILPDFRAEQGDDLRAFLKEL
FSISEILYSYHNYEDKKILISPIKTVLHKLPGKKHLKPLTLNKKDKFDLQSFKQELLLMG
YDFVDIVQDKAELSIRNDIIDIFSVNEQNPIRILFFEDEIESIRYFDINTQKSLQTELDR
INICPFLAHFSQDEYESVQDRLKEKDTDVLLNDFVSLGLWCIDDLCDYLELDYYAIKDLQ
EFDVKDKIIGEAKHFKSLELSSFTRDFFLLNKDKNITVLARNESLVDELNLKEFSNIKYV
NSNLVLNIGSAKELIVSLNKKYKAKKAKKASIIIDELSIGDFVVHEDYGIGKFLGLEMIE
ISGVKKDFVSIAYQGDDKLLLPVENLHLIDKYIASSSSIPILDKLGKGTFVKLKERLKAK
LFAIASSIVEMAAKRALIRAKDVRSDEKEELAFIKSANFTYTSDQLKVCEDIRADFKSSK
VMDRLLSGDVGFGKTEVAMNAIFTVVKSGYCALFFVPTTLLSQQHYKNLKKRLQAFDIEV
LKLDRFTSAKEKKYIAEKLAKNDAFVLVGTHALLNVKCDNLALVVIDEEHKFGVKQKEKL
KEFSQNAHILSMSATPIPRSLNQALSSIKSYSTLQTPPNDRLDVRTFVKEKNESLIKEAI
LRELRRAGQIFYIHNHIASIQSCKKDLLELFPNLRILILHSKIDAKSTEEEMLKFEDKQY
DLLLCTSIVESGIDLPNVNTIIVEQANRFGIADLHQLRGRVGRSDRQGYCYFLIDDKKSL
KEDALKRLASLESNSFLGAGSILAYHDLEIRGGGNLLGVDQSGHIEQIGYSLYIKMLEDE
INALSKGKDVELSKVDLKLNINAFLNEDLISEDRLRLELYRRLSKCELVSDVYEIAGEIE
DRFGKLDKFTKNFLDLIIIKILAKDRYLLISSYDDNIQFVDMNSQKIVLKAKSKDDGDVL
AFILEKLRNERGLNGLAKV
NT seq
2940 nt
NT seq
+upstream
nt +downstream
nt
atgcaagctaggctttttgaattcttacaagaaaaatcagcctctttgttactttgcgaa
gatagcaaggaggcggatttacttgctgatgtgtgtgaatttcttggctttaaatctttt
attttgcctgattttcgtgccgagcaaggcgatgatttaagagcctttttaaaagaactt
ttttctatatctgaaattttatatagctatcataattatgaggataaaaaaattctcata
tccccaatcaagacagttttgcataaacttccaggcaaaaaacacctaaaacctctcacc
ttaaacaaaaaagataaatttgatttgcaaagctttaaacaagagcttttgctaatgggc
tatgactttgtcgatattgttcaagataaggcagagcttagcattagaaatgatattata
gatatttttagtgtaaatgagcaaaatcctattagaattttattttttgaagatgagata
gaaagtatcaggtattttgatataaacactcaaaaatctcttcaaacagagcttgaccgc
attaatatttgtccgtttttagctcatttttctcaagatgagtatgagagtgtgcaagat
agattaaaagaaaaagatactgatgttttgcttaatgactttgtctcgcttggtttgtgg
tgtatagatgatttgtgcgattatttagagcttgattattacgctatcaaggatttgcaa
gaatttgatgtaaaagataagattataggcgaggcaaagcattttaagtccttagagcta
agttcttttactagagacttctttttgcttaataaggacaaaaatatcaccgtgttagcg
cgaaatgaaagtcttgttgatgagctaaatttaaaagaatttagcaatatcaagtatgtt
aatagcaatcttgtgcttaatataggctcggccaaagaactcatcgtatctttaaacaaa
aaatacaaggctaagaaagcaaaaaaagcaagtatcatcatagacgagcttagtatcggg
gattttgtagtgcatgaggattacggtattggcaagtttttgggacttgagatgattgaa
atttcaggcgttaagaaagattttgtaagcattgcttatcaaggagatgataagttatta
ttgcctgttgaaaatttgcacctaatagacaaatacatagcttcaagctctagcattcct
atacttgataagcttggaaaaggtacttttgtaaagcttaaagaaaggcttaaggcaaag
ctttttgccatagcttcaagtatagttgaaatggctgcaaaacgggctttaatccgtgca
aaagatgtaagaagtgacgaaaaagaagagcttgccttcataaaaagtgcgaattttacc
tacactagcgatcagctcaaggtctgcgaagatattagagctgattttaaaagctcaaag
gttatggataggcttttaagcggagatgtgggctttggcaagactgaagttgctatgaat
gctatttttacggttgttaaaagcggctactgtgctttatttttcgtgccaactacgctt
ttatctcaacagcactataaaaatttaaaaaaacgtttgcaagcctttgatatagaggtt
ttaaaacttgatagatttactagtgcaaaggagaaaaaatacatcgcagaaaagctagcc
aaaaacgatgcctttgtgctcgtaggaacgcacgcacttttaaatgtgaaatgcgataat
ttagcccttgttgtcatagatgaggagcataaatttggtgtaaaacaaaaggaaaaacta
aaagaattttcacaaaatgcacacatattgtctatgtcggctactcctataccaaggagt
ttaaatcaagctctaagctctatcaaatcatacagcaccttgcaaactccaccaaatgat
aggctggatgtaagaacctttgttaaagaaaaaaacgaaagcttgataaaagaggctata
ttaagagagctaagaagagcagggcaaattttttacatacataatcacatagcaagcata
cagtcttgcaaaaaggatttgttagagctttttccaaatttaagaattttgatacttcac
tcaaagatagatgccaagagtacggaagaggaaatgcttaaatttgaggataagcagtat
gatttgctactttgtacaagcatagttgaaagcggcatagacctacctaatgtaaacacc
ataatcgtagaacaagcaaatagatttggcatagctgatttgcaccaactaaggggcaga
gtagggcgaagcgacaggcaggggtattgttattttttaatagacgataaaaaaagttta
aaagaggatgctttaaaacgattggcctccttagagagtaattcgttcttaggggctggt
tctatactagcttatcatgatttagaaataagaggtggcgggaatttgcttggagttgat
caaagtggccatatagagcaaatcggatattccctttacatcaaaatgctagaagatgag
ataaatgcacttagcaagggaaaggatgttgagcttagcaaggtggatttaaaattaaat
atcaatgcttttttaaatgaggacttaataagcgaggataggcttcgcctcgagctttac
aggaggcttagcaagtgtgagttagtaagtgatgtgtatgagatagcaggagaaatcgag
gataggtttggcaaactagataaatttacaaaaaatttcttagatttaatcataattaaa
attctagcaaaagataggtatttgctaattagcagctatgatgataacatacaatttgtg
gatatgaattcgcaaaaaattgtactcaaggctaaaagcaaggacgatggggatgtttta
gcttttatcttggaaaaactaaggaatgaaagaggtttaaatggactggcaaaggtatga
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