Carnobacterium inhibens: Q783_01055
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Entry
Q783_01055 CDS
T02884
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
caw
Carnobacterium inhibens
Pathway
caw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
caw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Q783_01055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
caw03021
]
Q783_01055
03019 Messenger RNA biogenesis [BR:
caw03019
]
Q783_01055
Transcription machinery [BR:
caw03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Q783_01055
Messenger RNA biogenesis [BR:
caw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Q783_01055
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
S1CSD-TOTE-2
OB_RNB
NACHT
AAA_22
Mor
THDPS_N
Motif
Other DBs
NCBI-ProteinID:
AGY80959
UniProt:
U5S6X2
LinkDB
All DBs
Position
215286..216581
Genome browser
AA seq
431 aa
AA seq
DB search
MSELLTLAQLELKTLKEIYNYAKELKIPYYSQMNKKELALAVIRAQEEKQGFFIVEGVLD
IMAQQDFGFLRPINYTPSKEDIYISSSQIKRFGLRNGDKVSGKARPPKPSERYYGLMHVN
LVNGKDPEDAKERPHFPALTPLYPEKQITLETTQTKISNRMIDILAPVGFGQRGLIVAPP
KAGKTILLKEIANGIAENYPDAELIILLIDERPEEVTDIERSVKGEVVSSTFDQQPQNHV
RVTELVLERAMRLVEDKRDVIILMDSITRLARAYNLVLPPSGRTLSGGLDPAALYRPKRF
FGAARNIEEGGSLTILATALVDTGSRMDDMIYEEFKGTGNSELHLSRELAERRIFPAIDI
KKSSTRKEELLLENSRLEMIWKLRHAMIGDALDLTDQFIKELRKSENNQDFFEHFTDKTI
TQTRNSRSSHR
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atgagtgagttactaacattagcccaattagaattgaaaacattaaaagagatttacaac
tatgcaaaagaactcaaaataccttactatagccagatgaataaaaaagaattagcattg
gctgttataagggcgcaagaagaaaaacaaggattttttattgtagaaggtgtgctagat
attatggcacaacaagattttggttttttgcgcccaatcaactacacacctagtaaagaa
gatatttatatttcttcttctcaaatcaaacgttttggtttgagaaatggagataaagtg
tcgggtaaagctagaccgccaaaaccatctgaacgttattatggtctaatgcacgtgaac
cttgtgaatgggaaagatccggaagatgcaaaagaacgtcctcacttcccagcgttaaca
cctctttatcctgaaaaacaaattactctggaaacaacacaaactaagatttcaaaccgc
atgatagatattttagctcccgtaggttttggtcaaaggggtttgattgtagcacctcct
aaagcagggaaaactattttattaaaagaaatcgcaaatggaatcgctgaaaattatcct
gatgcagagttgattattttattgattgatgaacgtccagaagaagtgacggatattgaa
agaagtgtaaaaggagaagttgtctcttcaacttttgaccagcaaccacaaaaccatgta
cgtgtaacagaattggttttagaaagagccatgcgattagtggaagataaacgagacgtt
attattttaatggatagcatcacacgtttagctcgtgcttacaacttggttcttcctcca
agtggaagaaccttaagtggtggtttggatccggcagcattgtatcgtcctaagcgattt
tttggagctgcgagaaatattgaagaaggtggaagcttaacgattctggcgacagcctta
gtagacactggaagccgaatggacgatatgatctatgaagaatttaaaggtacagggaat
tcagaattacacttatcaagagaacttgctgaacgtcgtattttcccagcaatcgatatt
aaaaaatcaagtacacgaaaagaagaacttttattggaaaatagtagattagaaatgatt
tggaaattgcggcatgcaatgatcggagatgctttagatctaacagatcaatttataaaa
gagctgcgtaaatcagaaaacaatcaagatttttttgagcatttcacggataaaaccatt
actcaaacaagaaattcaagaagttctcatcgctaa
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