Carnobacterium inhibens: Q783_01085
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Entry
Q783_01085 CDS
T02884
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
caw
Carnobacterium inhibens
Pathway
caw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
caw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Q783_01085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
caw03019
]
Q783_01085
03009 Ribosome biogenesis [BR:
caw03009
]
Q783_01085
Enzymes [BR:
caw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Q783_01085
Messenger RNA biogenesis [BR:
caw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Q783_01085
Ribosome biogenesis [BR:
caw03009
]
Prokaryotic type
rRNA helicases
Q783_01085
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
CMS1
Motif
Other DBs
NCBI-ProteinID:
AGY80965
UniProt:
U5S6Y2
LinkDB
All DBs
Position
222203..223780
Genome browser
AA seq
525 aa
AA seq
DB search
MKFTELGLAPELLKSVERLGFEEATPIQSQTIPLALEGKDVIGQAQTGTGKTAAFGLPML
QKIDVTNRNVQGLVIAPTRELAIQTQEELFRLSRDKKIRVQVVYGGADISRQIRALKDAP
HIVVGTPGRLLDHIKRKTLKLGHVETLVLDEADEMLNMGFIDDIETIIHEVPDVRQTLLF
SATMPPAIKRIGVRFMKDPEHVQIKATTMSDSLIEQFFVRCKDFEKFDIMTRLFDVQTPE
LTIIFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLKSFKTGKLDVLVATDVAA
RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGVSVTFITPNEMGYLRVIEDLTKK
AMTPLRPPTNAEAFEGQIKASIDEVGSIIDANGLNRYEKAAAQLLETYTAEDLAAAFLKS
VTKDADEVPVKITPERPLPGRKGGSSHGGGSNRGASKGGYRGGNNRSGKPSERRGGGSSS
ASGKWNKDSKRSGSDNRRKDSRSKSTTDSRRKAGGERKFTIRDKD
NT seq
1578 nt
NT seq
+upstream
nt +downstream
nt
ttgaaatttacagaattaggattagcacctgaattattgaaatcagtagaacgtttagga
tttgaggaagcaacaccgatccaatcacaaacgattccactagcacttgaaggaaaagac
gttatcgggcaagcacaaacaggaactggtaaaacagctgcatttggtttaccaatgtta
caaaaaattgatgtaaccaatcgtaatgtacaaggtttagttattgcacctactcgtgaa
ttagctatccaaacacaagaagaattattccgtttaagccgcgataaaaaaatccgtgtt
caagttgtttatggtggagctgatatcagtcgccaaattcgtgctttaaaagacgcaccg
catattgttgtcggtacaccaggtcgtttattagaccacatcaaacgtaaaacattaaaa
ctaggacatgttgaaacattagtactagatgaagcagacgaaatgttgaatatgggattc
atcgatgacattgaaacgatcattcatgaagttccagatgtacgtcaaacattattattc
tctgctacaatgccgcctgctattaaacgcataggtgttcgctttatgaaagaccctgaa
catgttcaaattaaagcaactacaatgtctgatagtttaattgaacaattttttgtacgt
tgtaaagacttcgaaaaatttgatattatgactcgtttatttgatgttcaaacaccagaa
ttgacaatcatttttggccgtacaaaacgtcgtgtagacgaattagctcgtggattagaa
gctcgcggataccgtgctgaagggatccatggcgatctttctcaacaaaaacgtatgagc
gtgttaaaatcttttaaaacaggtaaattagatgttttagtagcaactgacgtagcagct
cgtggattagatatttccggagttacacacgtatataactatgatattcctcaagaccca
gaaagctatgttcaccgtattggacgtactggtcgtgcaggaaaagagggtgtttctgta
acttttattacacctaatgaaatgggatatttgcgtgttattgaagacttaacgaaaaaa
gcaatgacaccattacgtccaccaacaaatgcagaagcatttgaaggtcaaatcaaagcg
tcaattgacgaagtaggttctattattgacgctaatggcttgaatcgttacgaaaaagct
gctgcacaattattagaaacttacacagctgaagatcttgctgctgcattcttgaagagt
gtgacaaaagacgctgatgaagtaccagttaaaattactccagaacgtccattaccaggt
cgtaaaggcggaagcagtcatggcggcggaagcaatcgaggcgcaagtaaaggcggatac
cgtggcggaaataaccgtagtggtaaaccttctgaacgtcgtggtggcggaagctcaagc
gctagcggaaaatggaataaagattcaaaacgtagcggaagcgacaaccgtcgtaaagac
agccgtagtaaatctactactgatagccgtcgtaaagctggcggagaacgcaaatttact
atacgtgataaagactaa
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