Carnobacterium inhibens: Q783_04245
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Entry
Q783_04245 CDS
T02884
Name
(GenBank) Zn-dependent hydrolase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
caw
Carnobacterium inhibens
Pathway
caw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
caw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Q783_04245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
caw03019
]
Q783_04245
Messenger RNA biogenesis [BR:
caw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Q783_04245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RNase_J_b_CASP
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
P8
Motif
Other DBs
NCBI-ProteinID:
AGY81505
UniProt:
U5S8E1
LinkDB
All DBs
Position
877166..878845
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AA seq
559 aa
AA seq
DB search
MSTIKIIPLGGVRENGKNMYAVEVDEDIFVLDCGLMFPETELLGIDVVIPDFSYLEENRN
CVTGVFLTHGHEDAIGALPYFLQKFDVPVFGTELTIALAKLFVEKDSQVSKFDDYHIIDE
NTEIEFGDVIASFFRTNHTIPDSVGIALKTTEGSVVYTGDFKFDQSAKPMYQSNLSRIAD
IGKDKVLALLSDSSEAESPVENISDLKVAEEVLDTFQNATGRIIVASVASNILRIQQVLD
AAHKSHKKIFITGSNLEEIVRIAMELNKLQLPSEDLIVPITEIEKYEDKEIVVLETGVTG
EPIKTLTRMAKGKHTQVNIKEGDLVYIVTSPSTAMEVTVAQAENLIYRAGGTVKQISDNL
KASGHATPNDLKLMINLIKPTYFIPVQGEYRMLSAHAELAHEVGMSYKNIFIPGKGDIME
YKNERMHVAGQVTAGNTMVDGIGIGDIGNIVLRDRKLLSEDGIFVAVVTINRRKSKIISG
PEVMTRGFVYVKENTDLINQSNEIIRKVVEENLSRKEFEWSRLKQEIRDALNKHLFEQTR
RRPVILPIIMETSSRNRKN
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgagcacaattaaaattattccactaggtggagttcgagaaaatggaaaaaatatgtat
gctgttgaagttgatgaagacatctttgtattggattgtggattgatgtttccagaaaca
gaattactaggaatcgacgtagtcattcctgactttagttatttagaagaaaatagaaat
tgtgtaactggagtatttctaacacatggtcatgaagatgcaataggagcattgccttat
ttccttcaaaaatttgacgttccagtatttggtacggagttaacaatagctttagcaaaa
ttatttgttgaaaaagatagtcaagtaagtaaatttgatgattatcatattatagatgaa
aatactgagattgaatttggagatgtgattgctagtttctttagaacgaatcatacgatt
cctgattcagttgggatagcgcttaagacaactgaaggaagcgtcgtttatacgggtgat
ttcaaatttgaccaaagtgcaaaaccaatgtatcaaagtaacttgtcacgtattgctgac
attggaaaagacaaagtactagctttattgagtgattctagcgaagctgaaagcccagta
gaaaatatcagtgatttgaaagtagcagaagaagtattggatacattccaaaatgctaca
ggacgtatcatcgtagctagtgttgcaagcaacattctgcgtatccaacaagtcttagat
gctgctcataaatctcataagaagatttttattacaggaagcaaccttgaagaaattgtt
cgaattgctatggaattgaataaacttcaattgccaagtgaggatttaattgttccaata
acagagatcgaaaaatacgaagataaagaaattgttgtattagaaacgggtgttactggt
gaaccaattaagactttaacgcgtatggctaaagggaaacacactcaagtaaatattaaa
gagggcgatttagtttatatcgtaaccagcccttcaacagcaatggaagtaacagttgct
caagcagaaaacttgatttaccgtgcaggtggaactgtaaaacaaatttcagataattta
aaagcatcaggacatgcaactcctaatgatttaaaattaatgatcaatttgattaaacct
acttactttattcctgttcaaggagaataccgaatgctttctgctcatgcagaattggca
cacgaagttgggatgtcatacaagaatatttttattcctggaaaaggcgatattatggaa
tacaaaaatgaacgtatgcatgtagcaggacaagtaacagccggaaacacaatggtagat
ggtattggaattggcgatattggaaatattgtgttacgcgaccgtaaattgctatctgaa
gatggaatctttgtagcggtcgttactattaatcgcagaaaaagtaaaatcatctcagga
cctgaagttatgacgagagggtttgtatacgttaaagaaaatacagatcttattaatcaa
agcaatgagattatcagaaaagtagtagaagaaaatttaagtcgtaaagaatttgaatgg
agccgtttaaaacaagaaattagagacgctttaaacaaacatctttttgaacaaacacgt
agacgtccagtaattttaccaattattatggaaactagttcacgtaatcgcaaaaattaa
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