Corynebacterium atypicum: CATYP_04220
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Entry
CATYP_04220 CDS
T03227
Name
(GenBank) polynucleotide phosphorylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
cax
Corynebacterium atypicum
Pathway
cax03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cax00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CATYP_04220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cax03019
]
CATYP_04220
03016 Transfer RNA biogenesis [BR:
cax03016
]
CATYP_04220
Enzymes [BR:
cax01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
CATYP_04220
Messenger RNA biogenesis [BR:
cax03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CATYP_04220
Transfer RNA biogenesis [BR:
cax03016
]
Prokaryotic type
tRNA degradation factors
CATYP_04220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
KH_1
KH-I_KHDC4-BBP
RNase_PH_C
KH_2
OB_cyt-4
PCB_OB
KH_KhpA-B
Motif
Other DBs
NCBI-ProteinID:
AIG63990
UniProt:
A0ABN4DC60
LinkDB
All DBs
Position
898058..900352
Genome browser
AA seq
764 aa
AA seq
DB search
MAKKNGGSRGGFRPNNSVEFGFDDEYDIHEAVAVLDNGDFGTREIRFETGQLARQADGSV
TTYLDDETMLLATTTASAKPREGIDFFPLTVDVEERMYAAGRIPGSFFRREGRPSTDAIL
ACRLIDRPLRPTFVKGLRNEVQVVITVMSQHPDEFYDVVAINGASAATQLSGLPVSGPVG
GVRMALIADDAHPEGQWVAFPNAEQHSEALFELVVAGRIVKRKRGRRTVNDVAVMMVEAG
AGEHVVARIADGAPAPTESVVASGLEAAKPYIETLCEAQAGLAKRAAKETREFPLFPAYS
DEVYKKVEKKAARKLRKLMVIPEKQRRDEATNEHMAEVEQQLLGDEPDAEESKAVRAAYN
ALMKEIVREMILRDGFRIDGRSTNDIRDLEVEVDLVPRAHGSARFERGETQIVGVTTLDM
LKMEQHIDSLTPVTSKRYIHHYNFPPYSTGETGRVGSPKRREIGHGALAERALVPVIPSR
EEFPYTIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLKAPVAGIAMGLVSGEVDGETE
YVTLTDILGAEDAFGDMDFKVAGTEDFITALQLDTKLDGIPSKVLAGALEQAKEARLTIL
DTMAGVIETPDEMNDLAPRIETISIPVSKIGELIGPKGKTINAITEETGADVSIEEDGTV
YVSAQGGKAAQDAIDKINAIANPQLPKVGERYLGTVVKTVAFGAFVSLTPGRDGLIHISK
LGGNKRIDKVKDVVNVGDTIEVEIADIDNRNKISLVPVSDDDED
NT seq
2295 nt
NT seq
+upstream
nt +downstream
nt
ttggcaaagaagaacggcgggtccaggggtggattccgcccgaacaactccgtagagttc
gggtttgatgacgaatacgatatccacgaggcggtcgccgttttagataacggcgacttt
ggcacccgagagatccgcttcgaaacgggccagttggcccgccaggccgacgggtcggtg
acgacctacctggacgacgagacgatgctcttggcaaccaccactgcgtccgcgaagccg
cgcgaggggattgacttcttcccgctgaccgtcgacgtggaggagcggatgtacgccgcg
ggcaggatcccgggctcgttctttaggcgcgaggggcgcccgtccacggacgccatcctg
gcttgccgcctgatcgatcggccactgcgcccgacctttgtcaaggggctgcgcaacgag
gtgcaggtggtcatcacggtgatgagccagcacccggacgagttttacgacgtcgtggcc
attaacggggcgtcggctgccacgcagctttccgggctgccggtttctggccccgtgggc
ggggtgcgcatggcgcttatcgccgacgacgcccacccggagggccagtgggtggccttc
cccaacgccgagcagcactcggaggcgctgtttgagctcgtcgtcgccgggcgcatcgta
aagcgcaagcgggggcggcgcacggtgaacgacgtcgcggtgatgatggtcgaggccggg
gccggcgagcacgtggtggcccggatcgctgacggcgcgccggcgccgaccgagtcggtc
gtggccagtgggctcgaggccgccaagccgtacatcgagaccctctgcgaggcccaggcg
ggcctggcgaagcgcgcggcgaaagagacccgcgagttcccgctcttcccggcctactcc
gacgaggtgtacaagaaggtcgagaagaaggcggcgcgcaagctgcgcaagctgatggtc
atcccggagaagcagcggcgtgacgaggccaccaatgagcacatggctgaggtggagcag
cagctgctcggcgacgagccggacgccgaggagtccaaggcggtgcgcgccgcgtacaac
gcgttgatgaaggagatcgtccgcgagatgatcctgcgcgacggcttccgcatcgatggc
cgttcgaccaacgacatccgcgatctcgaggtcgaggtcgacctcgtgccgcgcgcacac
ggctccgcccgcttcgagcgcggcgagacgcagatcgttggggtgaccacgctggacatg
ctcaagatggagcagcacatcgactcgctgaccccggtgacttcgaagcgctacatccac
cactacaacttcccgccgtactccactggtgagaccggccgcgtcggctcgccgaagcgc
cgcgagattggccacggggcgctggcggagcgcgccctggtgccggtgatcccgtcccgc
gaggagttcccgtacaccatccgccaggtctccgaggctttgggctcgaacggctcgacc
tccatgggctcggtctgcgcctcgaccctgtcgctgttgaacgccggcgtgccgctgaag
gcgccggtcgcgggcatcgccatgggcctggtctctggcgaagtcgacggggagaccgaa
tacgtcaccttgaccgacatcctgggcgcggaagacgcctttggcgacatggacttcaag
gtcgccggcaccgaggacttcatcacggcgctgcagctggataccaagctggacggcatc
ccctcgaaggtgcttgccggcgccctggagcaggctaaagaggcccgcttgaccatcctg
gacaccatggccggcgtcatcgaaactcccgatgagatgaacgatctggctccgcggatc
gagacgatctcgattccggtctcgaagatcggcgagctgatcgggcccaagggcaagacg
atcaacgcgatcacggaggagaccggcgcggacgtctcgatcgaagaggacggcaccgtc
tacgtctccgcccagggcggtaaggcggcccaggacgcgatcgacaagatcaacgccatc
gccaacccccagctgcccaaggtgggcgagcgctacctgggcacggttgtcaagaccgtg
gccttcggcgcgttcgtctcgttgaccccgggccgcgacggcctgatccacatctcgaag
ttgggtggcaacaagcgcatcgacaaggtcaaagacgtggtcaacgtcggtgacacgatc
gaggtggagatcgcggacatcgacaaccgcaacaagatctcgctggtgccggtttcggac
gacgacgaagactag
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