Clostridium acetobutylicum EA 2018: CEA_G2896
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Entry
CEA_G2896 CDS
T01864
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
cay
Clostridium acetobutylicum EA 2018
Pathway
cay03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cay00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CEA_G2896 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cay03021
]
CEA_G2896 (rho)
03019 Messenger RNA biogenesis [BR:
cay03019
]
CEA_G2896 (rho)
Transcription machinery [BR:
cay03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
CEA_G2896 (rho)
Messenger RNA biogenesis [BR:
cay03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CEA_G2896 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
S1CSD-TOTE-2
NACHT
AAA_25
SAP
AAA_22
AAA
Spore_III_AA
DUF7326
AAA_14
AAA_24
NPHP3_N
AAA_19
Motif
Other DBs
NCBI-ProteinID:
ADZ21933
LinkDB
All DBs
Position
complement(3018912..3020363)
Genome browser
AA seq
483 aa
AA seq
DB search
MINNDLNDLESMTVNDLKELAKELGLRNVSKYRKKDLIDEINKKSPNSIEKNGIMLKENI
KPKNDLSEKSNTSESSNGNVSRPAEKTYTNNNRYVQKEKENKNERFKEMVDESDSAKGVL
ELVENNNFGFLRGKNYLTSPEDIYVSPSQIRRFNLKTGDEVQGKVRIPKEGEKFKALLYV
EKVNGENPEKSVRREPFEKLTPIYPNQRLSLEKNSDELATRLMDLISPIGKGQRGLIVAP
PKAGKTTLLKSVAQSLAKNHPETKLIVVLIDERPEEVTDMQRSIKGEVIYSTFDEEPEHH
TKVAYMVLERAKRMVEQGQDVVILLDSLTRLARAYNLTITPTGRTLSGGLDPGALIMPKK
FFGAARNIEEGGSLTILATALIDTGSRMDDMIFEEFKGTGNMEVHLDRRLQERRIFPAID
IYKSGTRKESELLSHDELEAAFKIRRVLYSNNSTQDVTEKLINMLNETENNNEIVNVINK
GKW
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
ttgattaataatgacttaaatgacttggaaagtatgactgttaatgatcttaaggaactt
gcaaaggagcttggacttaggaatgtatctaagtataggaaaaaagatttaattgatgag
ataaataaaaaatctccaaacagcatagaaaaaaacggaattatgcttaaggaaaatata
aaacctaaaaatgatctatcggagaaaagtaatacgtcagagagcagtaatggtaatgtc
agtagacctgctgaaaaaacatataccaataataatagatatgtgcagaaagaaaaggaa
aacaaaaatgaaagatttaaagaaatggtagatgaatcagattcagcaaagggagttctt
gaattagttgaaaataataatttcggatttttaagaggaaaaaattacttaactagcccg
gaagatatatatgtttcaccttcgcagataagaagatttaatctaaagacaggtgatgag
gtccaaggaaaggttagaatacctaaagagggagagaagtttaaggctcttttatatgtt
gagaaggttaatggcgaaaatcctgaaaaatctgttagaagagagccttttgaaaaatta
actcctatatatcctaatcaaaggctaagtttagagaaaaatagtgatgaacttgcaaca
agacttatggacttaataagccctattggaaaaggtcagagaggacttatagtagcacca
cctaaggctggaaaaacaacacttcttaaaagtgtggctcaaagtttagctaaaaaccat
cctgaaactaaactcatagttgttttgattgatgaaaggcctgaggaagttactgatatg
caaagaagtataaagggagaagtaatatattctacctttgatgaggaaccagagcatcat
acgaaggttgcatacatggtacttgaaagagctaaaagaatggtagagcaaggtcaagat
gttgttatacttttagacagtttaaccaggcttgcacgagcatacaaccttacaataact
ccaactggtagaaccctctcgggaggacttgatccaggagcattaattatgcctaaaaaa
ttctttggagctgctagaaatatagaagaaggcggaagtcttacgatacttgcaacagct
ttaattgataccggcagtagaatggatgatatgatatttgaagaatttaaaggtactgga
aatatggaagttcatcttgataggagacttcaggaaagaagaattttcccagcaatagat
atatataaatcaggaacaagaaaagaaagtgaacttttaagtcatgatgagcttgaagct
gcattcaagataagaagagtgctctatagcaataatagtactcaagatgttacggagaag
cttattaatatgcttaatgagactgagaacaataatgaaattgtaaatgtaatcaataag
ggaaaatggtga
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