Corynebacterium argentoratense: CARG_01200
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Entry
CARG_01200 CDS
T02821
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
caz
Corynebacterium argentoratense
Pathway
caz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
caz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CARG_01200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
caz03021
]
CARG_01200
03400 DNA repair and recombination proteins [BR:
caz03400
]
CARG_01200
Enzymes [BR:
caz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CARG_01200
Transcription machinery [BR:
caz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CARG_01200
DNA repair and recombination proteins [BR:
caz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CARG_01200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
16729027
NCBI-ProteinID:
AGU14431
UniProt:
U3GWS7
LinkDB
All DBs
Position
238898..242887
Genome browser
AA seq
1329 aa
AA seq
DB search
MLDVNYFDELRIGLATADDIRRWSKGEVKKPETINYRTLKPEKDGLFCERIFGPTRDWEC
ACGKYKRVRYKGIICERCGVEVTKSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKELERIIYFAANIITSVDDEARHNDLSTLEAEMLLEKKDVEADAESDIADRAAKLEAD
LAELEAAGAKADARRKVQNAAEKEMTHIRERAEREVARLEEIWQTFVKLAPKQMIVDESI
YTELVDRYEDYFTGGMGAEAIQTLIRNFDLDAEAEELRTIINEGKGQKKMRALKRLKVVA
AFQRSGNDPAGMVLDCIPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRMIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRMLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIIVGPQLRLHECGLPKLMALELFKPFVMKRLVEHEYAQNIKSAKRMVERQR
PEVWDVLEEAISQHPVMLNRAPTLHRLGIQAFEPVLVEGKAIQLHPLACEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLASNNILSPASGKPLAMPRLDMVTGLYFLTLEKGRDEFGGQ
GAYTPATEDAPATGVYSSVNEAIMAYDRGVLGLQAPIKVRISHLRPPADIEAEQFPDGWN
KGDTWLANTTLGRVKFNELLPWNYPYLEGVMVRKGGGTDKIMLGDVINDLAARYPMITVA
QTMDKMKDSGFYWATRSGVTITMSDVLVLPNKDEILDRYEAEASEIERKYWQQGALTPRE
RYDRLVELWKDATDTVGKAVEDLYPDDNPIPMIVKSGAAGNMRQIWTLAGMKGMVVNSKG
EYITRPIKTSFREGLTVLEYFNNSHGSRKGLADTALRTADSGYLTRRLVDVAQDVIVREE
DCATRQGIKLPVAVANGDGTFHRHSLVETSVLGRVLAADAIGANGEVVLPAGTELGELDV
DALVKGGVEEAKLRSVLTCQTPTGVCAKCYGKSMASGKQVDIGEAVGIVAAQSIGEPGTQ
LTMRTFHQGGVGGDITGGLPRVQELFEARVPKNKAPIASVAGTIKLEDEGNFYTLTITPD
DGGDDVVYEKLSKRQGLAMIKVPMESNPGAHIERTLQDGDHVTVGERLLRGPADPHDVLE
ILGRRGVEQHLIDEVQAVYRAQGVAIHDKHIEIIIRQMLRRGTVIESGSTEFLPGTLVDL
SEAKMANKEAVQSGGQPAELRSEIMGITKASLATESWLSAASFQETTRVLTDAAINKRSD
KLIGLKENVIIGKLIPAGTGIARYRNIQVKPTEAARNAAYSIPTYGDSIYGDDTFGDFTG
AAVPLDDFS
NT seq
3990 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaactacttcgacgagctccgcattgggctcgcaacagccgacgacatc
cgccgttggtccaagggcgaggtcaagaagccggagaccatcaactaccgaaccctcaag
ccggagaaggacggcctcttctgtgagcgcatcttcggtcccacccgcgactgggaatgt
gcctgtggcaaatacaagcgcgttcgctacaagggcatcatctgtgaacgctgtggcgta
gaagtcaccaagtccaaggtgcgccgtgagcgcatgggccacattgagcttgctgctccc
gtgacccacatctggtacttcaagggtgttccctcacgcctcggctacctgctcgacctt
gctcccaaggaactcgagcgcatcatctacttcgctgcgaacatcatcaccagcgttgac
gatgaagcacgccacaacgacctgtccaccctcgaagcagaaatgctcctcgagaagaag
gacgttgaagccgacgcagaatccgacattgctgaccgcgcagcaaagctcgaagccgac
ctggcagagctcgaagcagccggcgcaaaggccgacgcgcgccgcaaggtacaaaacgcc
gcagagaaggaaatgacgcacatccgcgaacgcgcggaacgtgaagtcgcccgactcgaa
gaaatctggcagaccttcgtcaagcttgcccccaagcagatgatcgtcgacgagtccatc
tacaccgaactcgttgaccgctacgaggattacttcaccggcggcatgggtgcagaagcc
atccaaaccctcatccgcaactttgacctcgacgcagaggccgaagaactgcgcaccatc
atcaacgagggcaaaggccagaagaagatgcgcgcactcaagcgcctcaaggtcgtcgca
gcgttccagcgctccggcaacgaccctgcaggcatggtgcttgactgcattccggtcatc
cccccggagcttcgccccatggtgcagctcgacggtggccgcttcgcaacctctgacctc
aacgacctctaccgtcgcgtcatcaaccgcaacaaccgcttgaagcgcatgatcgacctc
ggtgcccccgagatcatcgtgaacaacgaaaagcgcatgctgcaggaatccgttgacgcc
ctgttcgacaacggccgtcgcggccgccccgtcacaggccctggtaaccgcatgctgaag
tccctgagcgacctgctcaagggcaagcagggccgcttccgtcagaacctgctcggtaag
cgcgtcgactactctggtcgttccgttattatcgtcggcccccagctgcgcctccacgaa
tgtggtctgccgaagctgatggccctcgagctcttcaagcccttcgtcatgaagcgtctc
gtcgagcacgaatacgcacagaacatcaagtccgccaagcgcatggtggaacgccagcgc
cccgaggtgtgggacgtcctcgaagaggccatctcccagcaccccgtgatgctgaaccgt
gcacctaccctgcaccgccttggtatccaggccttcgagcccgtgctcgtcgaaggtaaa
gccatccagctgcaccccctggcctgtgaagcgttcaacgccgacttcgacggtgaccag
atggcagtccacctgcccctgagcgccgaagcccaggcagaggctcgcattctcatgctc
gcctccaacaacatcttgtccccggcctccggtaagccactggcaatgccgcgcctggac
atggtgaccggcctgtacttcctcaccctcgaaaagggccgcgacgaattcggtggccaa
ggcgcctacacccccgccactgaagacgctcccgctaccggtgtgtactcctccgtcaac
gaagccatcatggcttacgaccgcggtgtactgggcctccaagccccgatcaaggtacgc
atctcgcaccttcgacccccggcagacatcgaagcagagcagttccccgacggctggaac
aagggcgacacctggttggcaaacaccaccctgggccgcgtgaagttcaacgagctcctc
ccgtggaactacccctacctcgaaggcgtcatggtccgcaagggcggcggcaccgacaag
atcatgctcggcgacgtcattaatgacctcgctgcacgctacccgatgatcaccgtggca
cagaccatggacaagatgaaggactccggcttctactgggcaacccgttccggcgtcacc
atcaccatgtctgacgtgctcgttttgccgaacaaggacgaaatccttgaccgctacgaa
gccgaagccagcgagatcgagcgtaagtactggcaacagggtgcactcaccccgcgcgag
cgctatgaccgcctcgtcgaactgtggaaggacgcaaccgacaccgtcggtaaggcagtc
gaagacctgtaccccgacgataacccgatccccatgatcgtgaagtccggtgccgcaggt
aacatgcgtcagatctggaccctggccggcatgaagggcatggtcgtgaactccaagggt
gaatacatcacccgaccgatcaagacctccttccgtgaaggcctcaccgttctcgagtac
ttcaacaactcccacggttcccgtaagggcctggccgacaccgctctgcgtaccgcagac
tccggctacctcacccgtcgtctcgtcgacgtcgcacaggacgtcatcgtccgcgaagaa
gactgcgcaacccgccagggcatcaaactgcccgtcgctgttgccaacggtgacggcact
ttccaccgccacagcctggttgaaacctccgtcctcggccgcgtcctcgcagccgacgcc
atcggcgcaaacggtgaggttgtcctgcccgcaggcactgagcttggcgaactggatgtc
gacgcactggtcaagggcggcgtcgaggaagccaagctgcgctccgtactcacctgccag
acacccaccggtgtctgcgccaagtgctacggcaagtccatggcctccggcaaacaggtc
gacatcggcgaagccgtcggtatcgtcgctgcacagtccattggtgagcccggtacccag
ctgacaatgcgtaccttccaccaaggtggtgtcggtggcgacattaccggtggtctgccg
cgtgtccaggaactgttcgaggcccgcgttcccaagaacaaggccccgatcgcttccgtc
gccggcaccatcaagctggaagacgaaggcaacttctacaccctcaccatcaccccggac
gacggcggcgacgatgtggtctacgagaagctgtccaagcgtcaaggcctcgccatgatc
aaggtcccgatggagtccaacccgggcgcacacatcgagcgcactcttcaagacggcgac
cacgtcaccgtcggcgagcgtctactccgtggccccgccgacccgcacgacgtccttgaa
atcctgggccgtcgcggcgtcgaacagcacctcatcgacgaagtgcaggccgtctaccgt
gcacagggtgtggccatccacgacaagcacatcgaaatcatcatccgacagatgctgcgt
cgcggaaccgtcatcgaatccggctccaccgaattcctccccggcaccctcgtggatctg
tccgaagcgaagatggcaaacaaggaagcagtgcagtccggcggccagcccgcagagctg
cgctccgagatcatgggtatcaccaaggcctcgctcgcaaccgagtcctggctgtcggcg
gcctccttccaggagactacccgtgtcctcaccgacgctgccatcaacaagcgctccgac
aagctgatcggcctgaaggaaaacgtcatcatcggtaagctgatcccggctggtaccggc
atcgcccgctaccgcaacatccaggtcaagccgaccgaggccgcacgcaacgctgcgtac
tcgatcccgacctacggtgacagcatctacggcgacgacaccttcggtgacttcactggc
gctgccgttccgctggatgacttcagctag
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