Caloranaerobacter azorensis: G3A45_03195
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Entry
G3A45_03195 CDS
T06467
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
cazo
Caloranaerobacter azorensis
Pathway
cazo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cazo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G3A45_03195 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cazo03019
]
G3A45_03195 (rnr)
03016 Transfer RNA biogenesis [BR:
cazo03016
]
G3A45_03195 (rnr)
Enzymes [BR:
cazo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
G3A45_03195 (rnr)
Messenger RNA biogenesis [BR:
cazo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
G3A45_03195 (rnr)
Transfer RNA biogenesis [BR:
cazo03016
]
Prokaryotic type
tRNA degradation factors
G3A45_03195 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
CSD
OB_RNR_1st
DUF445
Malectin_like
RNase_II_C_S1
QcrA_N
Motif
Other DBs
NCBI-ProteinID:
QIB26400
UniProt:
A0A6P1YAL2
LinkDB
All DBs
Position
complement(574634..576748)
Genome browser
AA seq
704 aa
AA seq
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MGTKEKIVQFMKEEAYKPMLKEELVKVFGISNKEIKDFYKLLDVMEKEGIIVKTRSDRYG
VPERMNLIVGTLQGHPRGYGFVVPDNKDVKDIFIPSQDLNGALHGDRVIARVISRGFGGK
SEEGEIIRILERANKTIVGTFEKSKYFGFVVPDDNRISMDVFIPKAEINGAKTNQKVVVE
ITKWPEKRRNPEGRIIEILGYKGDVGTDILAIIKKYGLTEEFPEKVLKEADNIPEEIPEE
EINRRLDLRDKNIFTIDGIDAKDLDDAVSIERLKNGNFKLGVHIADVSYYVKEKSHLDKE
ALKRGTSVYLVDRVIPMLPKKLSNGVCSLNPGVPRLTLSVFMEIDKQGRVVDHEIVESII
QSKERLVYTDISNLLENDDEELKKRYSHILEDLKAMEELCNILRKKRENRGSIDFDFDEA
KIILDENGKPIDIKKAERRIANRIIEEFMLVCNETVAEYMYWAQIPFVYRIHEDPDEEKI
NEFNKFIHNFGYHLKGIQQIHPKELQNLLKKVEGTKEETVINTLMLRSLKKARYSAEPDS
HFGLAARYYCHFTSPIRRYPDLQIHRIIKAFINGELKGSKIEKLKKKLPHVAEQSSIRER
IADEAERETEDLKKVEYMSERLGEIYEGIISGVMPFGIFVELDNTIEGLVHISTLVDDYY
IYDEFNHSFIGERTKKTYKIGDVVKVKVMKADIDKREIDFIFVE
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atgggtacaaaagagaagattgtacaatttatgaaagaagaagcatataaaccgatgctt
aaagaagaacttgtaaaagtatttggaatatcaaataaagaaataaaagatttttataag
ttattagatgtaatggagaaagaaggtataatcgttaagactagaagtgatagatatgga
gtacctgaacgcatgaatttaattgtaggtactttgcaaggacatcctagaggatatggt
tttgtagtacctgataataaagatgttaaagatatttttataccctcacaagatttgaat
ggagcactgcatggagatagagtcatagcaagagtgataagcagaggttttggaggtaag
agtgaagagggagaaattataaggatacttgaaagagctaacaagacgattgtaggaaca
tttgaaaaaagtaagtattttggatttgtagttcctgatgataataggataagtatggat
gtatttattccaaaagcagaaataaatggagctaagacaaatcaaaaagttgttgttgaa
attactaaatggcctgaaaagaggagaaatcctgaaggtaggataatagaaatattaggc
tacaaaggggatgtaggcacagatatattggcaataattaaaaaatatggtcttacagag
gaatttcctgaaaaggttttaaaggaagctgataatatacctgaagagattccagaagaa
gagataaacagacgtttagatttaagagacaaaaatatatttactatagacgggatagat
gctaaagatttagatgatgcagtatcaattgaaagattaaaaaatggaaattttaaattg
ggagttcatattgctgatgtatcttattatgtaaaggaaaaatctcatttagataaagaa
gccttgaaaagaggcacaagtgtatatttagtcgatagagtaatcccaatgcttcctaag
aaattgtcgaatggagtttgcagtttaaatccgggagttcctagacttactctaagtgtt
tttatggagattgacaaacagggtagagtagtagaccatgaaattgtggaaagtattata
cagagcaaagaaagattagtttatacagatatttcaaatcttttagagaatgatgatgag
gaattaaagaaaaggtatagtcatattttagaagatttaaaggctatggaggaattgtgt
aatatattgaggaaaaaaagagaaaacagaggtagcatagatttcgattttgatgaagca
aaaattattttagatgaaaatggtaaacctatagatattaaaaaagcagagaggagaata
gcaaatagaattattgaagagtttatgcttgtttgtaatgaaacggtagcggaatatatg
tattgggcgcaaattccatttgtatataggatacatgaggatccagatgaagagaagatt
aatgaatttaataagtttattcataattttggatatcatttaaagggaattcaacaaatt
catccgaaagaacttcaaaatctattgaaaaaagtagaaggcactaaagaagaaacagta
ataaatacattaatgctcagatcattgaagaaagccagatatagtgctgaacctgatagt
cattttggattagcagcaagatactactgtcattttacttcacctataagaagatatcca
gatttacaaattcataggataataaaagcttttataaatggggagttaaagggtagcaaa
attgagaaattgaaaaagaaattacctcatgtagctgaacaatcatctataagagagaga
atagcggatgaggctgaaagagaaactgaagatttgaagaaagtagaatatatgtcagaa
agacttggcgaaatttacgagggtataatatctggtgtgatgccatttggtatttttgtc
gagttagataacactatcgaaggtttagttcatataagcactttagttgacgattattat
atatatgatgagtttaaccatagttttattggtgagagaactaaaaaaacttataaaata
ggggatgtagttaaagtaaaagtaatgaaagcagatatagataaaagagaaattgatttt
atatttgtagagtaa
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