Cereibacter azotoformans: LV780_01585
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Entry
LV780_01585 CDS
T07975
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cazt
Cereibacter azotoformans
Pathway
cazt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cazt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LV780_01585
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cazt03019
]
LV780_01585
Enzymes [BR:
cazt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LV780_01585
Messenger RNA biogenesis [BR:
cazt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LV780_01585
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UIJ30898
LinkDB
All DBs
Position
1:complement(320104..321465)
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AA seq
453 aa
AA seq
DB search
MPACRKMTMADFSTLGLSEKILQGLAKAQFTKATPIQVEAIPHVMQGRDLMGLAQTGTGK
TLAFGLPLLHRLLGVGHPPPPRTIRALILAPTRELVSQIAANLELFTKGTPVKVVTITGG
ASINRQTERLARGADIMVATPGRLIDLLDRNAVVLDHTGYLVLDEADQMLDMGFIHSLRK
IARFLPLKRQTLLFSATMPKLIEELAHTFLREPVRVQVAPPGKPVEKIAQGVHFIPQGDK
AKLLESYLLKHPGEQALVFGRTKHGSEKLMKLLVSWGFKAGSIHGNKSQNQRDRTLTEFR
DGTLDVLVATDVAARGIDIPGVRHVYNYDMPNVPENYVHRIGRTARAGAEGSAVAFVAPA
EMDEFRAVEKLLKQPIPVIGGAPWAADIVAAAPRPGQKPRQGGRPRAAGKLQGKPQGQAK
AHPRAGRASGVPGGQAAPKRPQRGPRRSEAARG
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atgcccgcctgccgaaagatgaccatggctgatttcagcacgctcgggctgtccgagaag
attcttcagggccttgccaaggcccagttcaccaaggccaccccgatccaggtcgaggcg
atcccgcatgtcatgcaggggcgcgacctgatgggcctggcccagaccggcaccggcaag
acgctagccttcgggctgccgctcttgcaccgcctgctgggcgtcggccacccgccgccg
ccgcgcaccatccgcgcgctgatccttgcgcccacgcgcgaactggtgagccagatcgcc
gccaacctcgagctgttcaccaagggcacgccggtcaaggtcgtcaccatcaccggcggc
gcctcgatcaatcgccagaccgagcggctggcgcgcggggcggacatcatggtggccacg
ccgggtcgcctcatcgacctgctcgaccgcaacgcggtggtgctcgatcatacgggctat
ctggtgctggacgaggccgaccagatgctcgacatgggcttcatccactccctgcggaag
atcgcgcgcttcctgccgctcaagcggcagacgctgctcttctcggccaccatgccgaag
ctgatcgaggagctggcccacaccttcctgcgcgagccggttcgcgtgcaggtggccccg
cccggcaagccggtcgagaagatcgcgcagggcgtgcacttcatcccgcagggtgacaag
gccaagctgctggagagctacctgctcaagcatccgggcgagcaggcgctggtcttcggc
cgcaccaagcacggctcggaaaagctgatgaagctgctggtcagctggggcttcaaggcg
ggctcgatccacggcaacaagagccagaaccagcgtgaccgcaccctgaccgagttccgc
gacggcacgctcgacgtgctggtggccaccgatgtggcggcccgcggcatcgacattccg
ggcgtgcgccacgtctacaactacgacatgccgaacgtgcccgagaactacgtccaccgg
atcggccgcaccgcccgcgccggcgccgagggcagcgccgttgccttcgtcgccccggcc
gagatggatgagttccgcgcggtcgagaagctgctgaagcagccgatcccggtcatcggt
ggcgcgccctgggcggccgacatcgtggccgccgcaccgcgtccggggcagaagccgcgg
cagggcggccgtcccagggccgccggcaagctgcagggcaaaccgcagggtcaggcgaag
gcgcatccgcgcgccggacgtgcctcgggcgtgcccggtggacaggcggcgcccaagcgt
ccccagcgcggtccgcgtcgcagcgaagccgctcgcggctga
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