Cereibacter azotoformans: LV780_12070
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Entry
LV780_12070 CDS
T07975
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
cazt
Cereibacter azotoformans
Brite
KEGG Orthology (KO) [BR:
cazt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cazt03019
]
LV780_12070 (hrpB)
Enzymes [BR:
cazt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
LV780_12070 (hrpB)
Messenger RNA biogenesis [BR:
cazt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
LV780_12070 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
DEAD
Helicase_C
CON_HrpB
HA2_N
ResIII
AAA_19
AAA_30
nSTAND3
AAA_11
LAL_C2
Motif
Other DBs
NCBI-ProteinID:
UIJ30031
LinkDB
All DBs
Position
1:2404318..2406744
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AA seq
808 aa
AA seq
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MTETLPIDSALPALVEALSNRRMVVLQAPPGAGKTTRVPLAILDAGLTGERIVMLEPRRL
AARAAAERMAATLGEPVGQTVGYRIRGEARVSPASRIEVVTEGILTRMIQDDPSLEGIGA
LIFDEFHERSLNADLGLALALEVRGALREDLLLVAMSATLDAGPVADLMGGAPVVTSEGR
AFPVETRWLARPLAPGARLEPEVAALVRRAAVETEGDILVFLPGEGEIRRVQGMLDLPGV
RVAPLFGALDFAAQRAALEPGPERRIVLATSIAETSLTIPGVRVVVDAGRARRARFDPSS
GMSRLVTERVTRAEADQRRGRAGRVAEGICYRMWTRGEEGALAAFPPAEIEAADLTGLAL
ELAVWGSADLPFLTPPHPGVLAEARGLLERLGALEDGRITAHGKRLARLPLHPRLGHMLT
VAGPSAAPLAALMADRDPVKGPPDLALRLAALADPKRFPDEHPHEVNRTALARVRDEARR
LSRAVATPDAGLSVGQMAALAYPDRVGLRRKGEAPRWVLSGGKGAAMEPGLPLSGARLIV
ATDLDGDAREAKVRQAAPIPESELRQLFAPQIRWRTVCDWSRREGRVVARRQETFGALVL
DDRTWPEVPPEALARAAFEGLRQIGLPWSEPARRLRARIALLRAEGAEMPDTSDAALLAD
PEWLLPYLGTRRTEAELRALDLTEPLRALLGWEGVQLLDRLAPAHFETPLGRKVPIDYEG
EAPGIEIRLQEMFGVTVHPTVGPRRLPLRITLLSPGQRPVQVTMDLPGFWASSYADVRRD
MRGRYPRHPWPEDPTVAEPTLRAKPRGT
NT seq
2427 nt
NT seq
+upstream
nt +downstream
nt
atgaccgagacgctgccgatcgactctgcgctgcccgccctggtggaggcgctctccaat
cgccggatggtggtgctccaggcgccgcccggtgcgggcaagaccacgcgcgtgccgctt
gcgatcctggatgccgggttgaccggggaacggatcgtcatgctcgagccgcggcgtctt
gcggcgcgggcggccgccgagcggatggcggccacgctcggcgagccggtgggccagacc
gtcggctaccgcatccggggcgaggcgcgcgtctcgccggccagccgcatcgaggtggtg
accgagggcatcctcacccggatgatccaggacgatccctcgctcgaagggatcggcgcg
ctgatcttcgacgagttccacgagcgcagtctgaacgcggatctgggacttgcgctggcg
ctcgaggtgcggggcgcgctgcgcgaggacctgctgctggtcgcgatgtctgcaacgctt
gacgcggggccggtggccgatctgatgggaggggcgcccgtcgtgacgtcggaggggcgc
gcctttccggtcgagacgcggtggctggcgcgccccctcgcccccggtgcgcggctcgag
cccgaggtggcggccctggtgcgacgggccgcagtcgagaccgagggcgacatcctcgtc
ttcctgccgggcgagggcgagatccggcgcgtgcagggcatgctcgacctgccgggggtg
cgcgtggcgccgctctttggtgcgctcgacttcgcggcccagcgcgcggcgctcgagcca
ggcccggagcgtcggatcgtgctggccacctcgatcgccgagacctcgctgaccattccc
ggcgtgcgggtggtggtcgatgccggccgcgcgcggcgggcgcggttcgatccgagttcc
ggcatgtcgcggctggtgaccgagcgggtgacgcgggccgaggccgaccagcgccgcggc
cgcgcgggccgtgtggccgagggcatctgctaccggatgtggacgcggggcgaggaaggg
gcactggcggccttcccgccggccgagatcgaggcggcggatctgaccgggcttgcgctc
gagctggcggtctggggcagcgccgacctgccgttcctgacgccgccccatcccggcgtg
ctggccgaggcgcgcgggctgctcgagcggctgggcgcgctggaggatggccggatcacc
gcccatggcaagcggctggcgcgtctgccgctccatccccggctgggccacatgctgacg
gtggcggggccctccgccgcgccgcttgccgcgctgatggccgaccgtgacccggtgaag
gggccgcccgatcttgcgctgcgtctggcggcgctggccgatccgaagcggttcccggac
gagcatccgcacgaggtgaaccgcacggccctcgcccgcgtccgggacgaggcccgccgg
ctctcccgcgcggtggcgacgcccgacgcgggtctgtctgtggggcagatggcggcgctg
gcctatcccgaccgggtcggcctgaggcgcaagggcgaggcgccgcgctgggtgctatcg
ggcggcaagggcgcggcgatggaaccgggcctgccgctctcgggcgcgcggctgatcgtg
gcgaccgatctcgacggcgacgcgcgcgaggcgaaggtgcggcaggcggcgccgatcccg
gaatccgagctgcgccagctctttgcgccacagatccgctggcgcacggtctgcgactgg
tcgcgccgcgaaggccgcgtcgtggcgcggcggcaggaaaccttcggcgcgctggtgctc
gacgaccggacctggcccgaagtgccccccgaggcgctggcccgcgcggccttcgagggg
ctgcgccagatcggcctgccctggagcgagcccgcccgcaggctgcgcgcccgcatcgcc
ctcctgcgcgccgagggggccgaaatgcccgacacgtcggacgcggcgctgctggccgac
cccgagtggctgctgccctacctcggcacccgccgcaccgaggccgagcttcgcgccctt
gacctgaccgagccgctgcgcgccctcctcggctgggagggggtgcagcttctcgaccgg
ctggcgcccgcgcatttcgagacaccgctcgggcgcaaggtgccgatcgactacgaggga
gaggcgccgggaatcgagatccggctgcaggagatgttcggcgtgacggtgcacccgacg
gtgggccccagaaggctgcccttgcggatcaccctgctgtcaccgggccagcggccggtg
caggtgacgatggatcttccgggcttctgggcaagttcctatgcggatgtccgccgcgac
atgcgcggtcgctacccgcgccatccctggcccgaggacccgacggtggccgagcctacg
ctgcgggccaagccgcgcggcacctga
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