Clostridium botulinum A ATCC 19397: CLB_1322
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Entry
CLB_1322 CDS
T00574
Name
(GenBank) RNA-metabolising metallo-beta-lactamase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
cba
Clostridium botulinum A ATCC 19397
Pathway
cba03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cba00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CLB_1322
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cba03019
]
CLB_1322
Messenger RNA biogenesis [BR:
cba03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CLB_1322
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
ABS35467
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All DBs
Position
1374692..1376356
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AA seq
554 aa
AA seq
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MSNKDSVKVIPLGGLGEIGKNITAFEYGNEIVIIDCGISFPDEEMYGVDLVIPDITYLLN
NKDKVKAIFLTHGHEDHIGSLPYILQQLNRPVYGTALTLGIVENKLKEHNMLSDCELNKV
EAGDIVELKNLKIEFIRNTHSIADSCSIAIHTPVGVILHTGDFKIDYTPIDGLVMDFHRI
AELGKKGVLLLMADSTNVQRKGHTISEKSIGETLTKIFSNAKGRVIVATFASNIHRMQQI
IDASIEYGRKVAFSGRSMENISKVAMDLGYLHIPETYLITVDEMKNYPNEQITIITTGSQ
GEPMAALARIAYSNHRKIAIEPKDLFIISASPIPGNEKLISRVINELFKKGADVIYEALE
EVHVSGHAYEEELKLIHTLVHPKYFMPVHGEYRHLKRHVDLAMELGMERENIFSLETGQV
LEISHEEAKVSGKVRTGSIFVDGIGVGDVGNIVLRDRRYLAQDGMLTIVVTLEKESYSVI
AGPDIITRGFIYVKESEDLINEVKGIVKKELENCLENKIIEWYVLKSNIKKSVEKYLYEK
TKRRPIVLPIIMEI
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
gtgagcaataaagatagtgtaaaggttattcctttgggtggacttggagaaattggtaaa
aatataactgcttttgaatatggaaatgaaatagtaatcatagattgtggtatatccttt
ccagatgaggagatgtatggtgtagatttggttattccggatataacctaccttctaaat
aataaagataaagtaaaagctatttttctaactcatggacatgaagaccatataggatct
ttaccttatattctgcaacaattaaataggcctgtttatggtactgcattaaccttaggt
atagtagagaataaactaaaagaacataatatgctttcagattgtgaacttaataaggtg
gaagcaggagatatagtagaacttaaaaatttaaagatagaatttataagaaatactcat
agtatagcagattcttgttccatagctattcatacgccggtgggagttatattacatact
ggcgattttaaaatagactatacacctattgatggattagtaatggattttcatcgtatt
gctgaattaggcaaaaaaggagtattacttcttatggctgatagtacaaacgtacagcgt
aaggggcacacaatttccgagaaatctataggagaaaccttaactaaaattttttcaaat
gctaaaggaagggttattgtagcaacttttgcttcaaacatacataggatgcagcaaata
atagatgcatctatagagtatggtagaaaagtagccttcagtggaagaagcatggaaaat
atatctaaggtagccatggacttgggatatcttcatataccagaaacttatttaataact
gtagatgaaatgaaaaattatcctaatgaacaaataaccataataactactggaagtcaa
ggagaacccatggcagctcttgcaagaatagcttattctaatcatagaaaaatagctata
gagccaaaggatttatttattatttctgcatcaccaattccaggaaatgaaaaacttata
tctagagtaataaatgagttatttaaaaagggtgcagatgtaatatatgaagcattagaa
gaggtacatgtatctggtcatgcttatgaggaagaattaaaattaattcatacattggtg
catcccaaatattttatgccagtacatggagaatacaggcacctaaaacgacatgtggat
ttagccatggagttaggcatggaaagagagaacatattctctttagaaacagggcaagtt
ttagaaatatcacatgaagaagcaaaagtatcagggaaggtacgcacaggatctatattt
gtagatggtataggtgtaggtgatgtagggaatatagtgctcagagatagaaggtattta
gcgcaggacggtatgttaaccatagtagtaactctagaaaaagaatcctacagcgtaata
gcgggacccgatataataacaaggggattcatatatgtaaaagagtcagaggatttaata
aatgaagtaaaaggaatagtaaaaaaagaactagaaaattgtttagaaaataaaataatt
gaatggtatgtattaaaatcaaatattaaaaaatctgtagaaaaatatttatatgaaaaa
acaaagagaaggccaatagttttacctataattatggaaatttaa
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