Clostridium botulinum A ATCC 19397: CLB_2500
Help
Entry
CLB_2500 CDS
T00574
Name
(GenBank) RNA-metabolizing metallo-beta-lactamase family protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
cba
Clostridium botulinum A ATCC 19397
Pathway
cba03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cba00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CLB_2500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cba03019
]
CLB_2500
Messenger RNA biogenesis [BR:
cba03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CLB_2500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_6
CFAP54_N
Motif
Other DBs
NCBI-ProteinID:
ABS32630
LinkDB
All DBs
Position
complement(2609724..2611433)
Genome browser
AA seq
569 aa
AA seq
DB search
MRVDKEKDKAKDRVKDKEKDKIKIIPLGGLNEIGKNLTAIEYKNDIVVIDCGLKFPDDDM
LGIDVVIPDITYLKKNINKVKGIFLTHGHEDHIGALPYVLRAVNVPVYGTKLTLGIVETK
LKEHGLLSSVELKCIKPREIIRLQNVSVEFIRTSHSIADTVAIAIHTPLGVVLHTGDFKI
DYTPIDGHVTDLARFAEIGKRGVIAMMADSTNVERPGYTMSESTVGEAFLNIFSGVKGRI
IVATFASHIHRIQQIIRAAEKFKRKVAVSGRSMENIMEVAMKLGYIKAEKNIFISIDAIN
KYPDDQVVIITTGSQGEPMSALSRMAASEHKKVNIKPGDKVIISATPIPGNEKLVSRVIN
QLFKKGADVIYETLADIHVSGHACQEELKLMHTLVRPKYFIPVHGEYRHLKQHGELACQL
GLPENHVMVSDIGDVIEVSRECIRKNGSVVSGQVFVDGLGVGDVGNIVLRDRKHLSQDGI
LTVVVTIEKVSGSVIAGPDIISRGFVYVRESEDLMEEAKDLVKKALEECERNHITEWAAI
KTNIKDVLRGFLYEKTKRKPMILPIIMEI
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
ttgcgagtggacaaagaaaaagataaagcaaaagatagagtaaaagataaggagaaggat
aaaataaagattattcctttaggcggcttaaatgaaattggcaaaaatttaactgctata
gaatacaaaaatgatatagtagttatagattgtggccttaaatttccagacgacgatatg
ttaggaatagatgtagttattcctgacataacttatcttaaaaagaatattaataaagta
aaaggtatatttttaactcatggtcatgaagatcacataggagcattaccctatgttctg
agagcagtaaatgtaccagtatacggaactaagcttacattaggtatagtagaaaccaag
ttaaaagaacatggactactaagttctgtggagttaaaatgcataaagccaagggaaata
attagacttcaaaatgtttctgtggaatttataagaactagccacagtatagcagacaca
gtagctatagctatacatacacctttaggggttgttcttcatacaggagactttaaaata
gactacactcctatagatggtcatgttacagatttagctagatttgctgaaataggtaag
cgtggagttattgctatgatggcagatagtacaaatgtagaaagaccaggctataccatg
tcagaaagtactgtaggggaagcttttctaaatatattctcaggagtcaagggaagaata
attgttgctacttttgcatctcatatccatagaatccaacaaataataagggctgctgaa
aaatttaaaagaaaagtagcggtttctggtagaagtatggaaaatattatggaagtagct
atgaagcttggatatataaaagcagaaaaaaatatatttataagcatagatgctataaat
aaatatccagatgaccaagtagttataataactacaggaagtcaaggagagcctatgtca
gctctttctaggatggcagcttcagagcataaaaaagtaaatataaagcccggtgataag
gtaattatatctgcaacacctatcccaggtaatgaaaaattagtatctagggtgataaat
cagttatttaaaaagggtgcagatgttatatatgaaacacttgcagatatccatgtatct
ggtcatgcatgccaggaagaacttaaacttatgcatacattagtaagacctaaatatttt
atacctgttcatggagaatatagacacttaaaacaacatggagaacttgcctgtcaatta
ggattgccagagaatcatgttatggtttcagatataggtgatgttatagaagtaagtaga
gaatgtattagaaaaaatggctctgtagtgtcaggtcaagtctttgtagatggactaggt
gtaggagatgtagggaatatagtattaagagatagaaagcatttatctcaagatggtata
ttaacagtagttgttactatagaaaaggtttcaggctctgttattgcaggtcctgatata
atatcaagaggttttgtttatgtaagagaatcagaggatttaatggaagaagctaaagat
ttagtaaaaaaagctctagaagaatgtgaaagaaatcatattacagaatgggctgcaatt
aaaacaaatataaaagatgttttaagaggattcttatatgaaaaaacaaaaagaaaacct
atgatattaccaattataatggaaatatag
DBGET
integrated database retrieval system
