Serpentinimonas raichei: SRAA_0201
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Entry
SRAA_0201 CDS
T03614
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit/160 kD subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cbaa
Serpentinimonas raichei
Pathway
cbaa03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cbaa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SRAA_0201 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cbaa03021
]
SRAA_0201 (rpoC)
03400 DNA repair and recombination proteins [BR:
cbaa03400
]
SRAA_0201 (rpoC)
Enzymes [BR:
cbaa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SRAA_0201 (rpoC)
Transcription machinery [BR:
cbaa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SRAA_0201 (rpoC)
DNA repair and recombination proteins [BR:
cbaa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SRAA_0201 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
BAO80055
UniProt:
A0A060NH84
LinkDB
All DBs
Position
complement(207940..212151)
Genome browser
AA seq
1403 aa
AA seq
DB search
MKSFLDLFKQITPDEHFDAIKIGLASPEKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIDLAAPCAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVVVDPGMTPLKKFAIMSEDDFDAKEREYGDEFVAKM
GAEGIQELLRSIEIDSEIERLRNDLTGSELKVKKNAKRLKVLEAFKKSGIKPEWMVLDVL
PVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNSRLKRLLELKAPEIIARNEKRMLQEA
VDSLLDNGRRGKAMTGANKRALKSLADMIKGKGGRFRQNLLGKRVDYSGRSVITVGPTLK
LHQCGLPKLMALELFKPFIFARLEQMGIATTIKAAKKEVEAGTPVVWDILEEVIREHPVL
LNRAPTLHRLGIQAFEPLLIEGKAIQLHPLVCSAFNADFDGDQMAVHIPLSVEAQMEART
LMLSSNNVLFPANGEPSIVPSQDVVLGLYYTTRERINGKGEGMVFADILEVQRALDAGVA
ELTAKVSVRLTEYLKNKEDGQFTPVTKLVQTTVGRALLSEILPKGLPFELINKALKKKEI
SKLINASFRKCGLKETVVFADKLLQNGFRLATRAGISIAIDDMLVPTEKHTIIARAEGEV
KEIAQQYASGLVTSGERYNKVVDIWGKAGDDISKVMMERLKKEKTIDRHGNEVEQESFNS
IYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARK
GLADTALKTANSGYLTRRLVDVTQDLVVTEDDCGTANGTLMRAIVEGGEVIESLRDRILG
RTTVDDVLNPETQQVVIAAGQIVDEDGCDLIDALGIDEVRVRTALTCETRFGLCAKCYGR
DLGRGGPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSSGSVGFN
ATMRYVTNTKGELVVIARSGEIIIHDEQGRERERHKVPYGAILAIRPDQAIKAGTILANW
DPLTRPIITEFAGTVKFENVHEGMTVAKQVDDVTGLSTLVVIDPKRRGVTKVVRPQVKLI
DVAGNEVKIPGTDHSVTIGFQVGALIQVRDGQDVGPGEVLARIPVEGQKTRDITGGLPRV
AELFEARTPKDKGILAEITGTVSFGKETKGKVRLQITDPDGKVWEDLVPKEKNIVVHEGQ
VVNKGESVVDGPADPQDILRLLGIEELSRYIVDEVQDVYRLQGVKINDKHIEVIVRQMLR
RVVVSNPGDSGYIGGEQVERSEILNTNDDLLKAGKTPASYNNVLLGITKASLSTDSFISA
ASFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGMAFHKARHAKERMDDEERRA
IAEADAVALATSLADAGGDSSAE
NT seq
4212 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcattcctcgacctgttcaagcagatcacccccgacgagcatttcgatgccatc
aagatcgggctggcctcgcccgagaaaatccgttcttggtctttcggtgaagtcaaaaaa
cccgagaccatcaactaccgcaccttcaagcccgagcgcgacggcttgttttgcgccaag
atcttcgggcccatcaaagactacgaatgcctgtgcggcaagtacaagcgcctcaagcac
cgcggcgtgatctgcgagaagtgcggcgttgaagtcacgcagaccaaggtgcggcgcgag
cgcatgggccacatcgacctagccgcgccctgcgcccacatctggttcctaaagagcctg
ccgagccgcctcgggatggtgctcgacatgacgctgcgcgacatcgagcgcgtgctgtat
ttcgaagcctacgtggtggtggacccgggcatgacgccgctaaaaaaattcgccatcatg
agcgaagacgacttcgacgccaaagagcgcgagtacggcgacgagttcgtggccaagatg
ggtgccgagggcatccaggagctgctgcgcagcatcgagatcgacagcgagatcgagcgc
ctgcgcaacgacctcaccggctccgagctcaaggtcaagaaaaacgccaagcgcctcaag
gtgctggaagcgttcaaaaaatcgggcatcaaacccgagtggatggtgctcgacgtgctg
ccggtgctgccgcccgacctgcgcccgctcgttcccctcgacggcggccgctttgccacc
tccgacctcaacgacctgtaccggcgtgtgatcaaccgcaacagccgcctcaagcgcctg
ctcgagctcaaagcgcccgagatcatcgcgcgcaatgaaaagcgcatgctgcaagaggca
gtggacagcctgctcgacaacggccgccgcggcaaggccatgaccggcgccaacaagcgc
gccctcaagtcgctggccgacatgatcaagggcaagggcgggcgcttccgccaaaacttg
ctcggcaagcgggtcgattactcgggccgctcggtcatcaccgtcggccccacgctcaag
ctgcaccagtgcggcctgcccaagctgatggcactcgaattgttcaagcccttcatcttt
gcgcgcctcgagcagatgggcatcgccaccaccatcaaggcggccaaaaaagaagtcgaa
gccggcacgccggtggtctgggacatcctcgaagaggtgatccgcgagcacccggtgctg
ctcaaccgcgccccgacgctgcaccgcctcggcatccaagcctttgagccgctgctgatc
gagggcaaggcgatccagttgcacccgctggtgtgttcggccttcaacgccgacttcgac
ggcgaccaaatggcggtgcacattccgctgtcggtcgaggcgcagatggaagcgcgcacg
ctcatgttgtcgtccaacaacgtgctgttcccggccaacggcgagccctccatcgtgccc
tcgcaggacgtggtgctgggcctgtactacaccacccgcgagcgcatcaacggcaagggc
gagggcatggtgtttgccgacattctcgaggtgcagcgcgcactcgacgccggcgtggcc
gagctgacggccaaggtgtcggtgcgcctgaccgaatacctgaaaaacaaggaagacggt
cagttcacgcccgttaccaagctggtgcagaccaccgtcggccgtgccctgctgagcgag
attttgcccaagggcctgcccttcgagctcatcaacaaggcgctcaagaagaaggaaatc
tccaagctcatcaacgcgtcgtttcgcaagtgcggcctcaaagagacggtggtgttcgcc
gacaagctgctgcaaaacggctttaggctggccacccgcgccggcatctcgatcgccatc
gacgacatgctggtgccgaccgagaagcacaccatcatcgcccgtgccgaaggcgaggtc
aaagagatcgcgcagcagtacgcctccggtctggtgacctcgggcgagcgctacaacaag
gtagtggacatctggggcaaggccggcgacgacatctccaaggtcatgatggagcgcctg
aaaaaggaaaaaaccatcgaccgccacggcaacgaggtggagcaggagtccttcaactcg
atctacatgatggccgactcgggcgcgcgcggctcggcggcgcagattcgccagttggcc
ggcatgcgcggcctgatggccaagcccgacggctcgatcatcgaaaccccgatcacggcc
aacttccgtgaggggctgaacgtgctgcagtacttcatctcgacccacggcgcgcgcaag
gggctggccgacacggcgctcaaaaccgccaactcgggctacctgacgcgccgcctggtc
gatgtgacgcaagacctggtggtgaccgaagacgattgcggcaccgccaacggcaccctg
atgcgcgccatcgtcgaaggcggcgaggtgatcgagtcgctgcgcgaccgcattctgggc
cgcaccacggtggatgacgtgctcaaccccgaaacccagcaggtggtgattgcggctggc
cagatcgtcgatgaagacggctgcgacctgatcgacgccctgggcatcgacgaagtgcgc
gtgcgcaccgcgcttacttgcgaaacccgctttggcctgtgcgccaagtgctacgggcgc
gatctgggccgtggcggcccggtcaacatcggcgaagcggtgggcgtgatcgcggcgcag
tcgatcggcgagccgggcacccagctcaccatgcgcaccttccacatcggcggtgcggcg
tcgcgcgccgcggtggcttccagcgtggaggccaagtccagcggcagcgtgggcttcaac
gccaccatgcgctacgtcaccaacaccaagggcgagctggtggtgatcgcgcgctcgggc
gaaatcatcatccacgacgaacaagggcgcgagcgcgagcgccacaaagtgccctacggc
gccattctggcgatccggcccgaccaggccatcaaggccggcaccattttggccaactgg
gacccgctgacgcgccccatcatcaccgaatttgccggtacggtgaagttcgagaacgtg
cacgagggcatgacggtggccaagcaggtcgatgacgtgaccggcttgtccaccctggtg
gtgatcgaccccaaacggcgcggcgtcaccaaggtggtgcggccgcaggtcaagctgatc
gatgtggccggcaacgaagtcaaaatccccggcaccgaccactcggtgacaatcggcttc
caagtgggcgccctgatccaggtgcgcgacggccaggacgtgggccccggcgaggtgctg
gcgcgcattccggtcgagggccagaaaacgcgcgacatcaccggcggtttgccgcgggtg
gccgagctgttcgaggcgcgcacgcccaaagacaaaggcatcttggccgaaatcaccggc
accgtgagctttggcaaggaaaccaagggcaaggtgcggctgcagatcaccgacccggat
ggcaaggtctgggaagacctggtgcccaaagagaaaaacatcgtggtgcacgaaggccag
gtggtgaacaagggcgagtcggtggtcgacggcccggccgatccgcaagacatcctgcgc
ctgctgggcatcgaggagttgtcgcgctacatcgtcgatgaggtgcaagacgtgtaccgc
ctgcaaggggtgaagatcaacgacaagcacatcgaggtgatcgtgcgccagatgctgcgc
cgcgtggtggtgagcaacccgggcgactcgggctacatcggtggcgagcaggtcgagcgc
tccgaaatcctcaacaccaacgacgacttgctcaaagccggcaagaccccggccagctac
aacaacgtgctgctgggcatcaccaaggcctcgctgtcgaccgattccttcatctcggcc
gcttcgttccaagaaaccacgcgcgtgctcaccgaagccgccatcatgggcaagcgcgac
gagctgcgcggcctgaaagagaacgtgatcgtcgggcgcctgattccagccggcaccggc
atggccttccacaaagcgcgccacgccaaagagcgcatggacgacgaagagcgccgtgcc
atcgctgaggccgatgcagtggcgttggccaccagcttggccgacgcgggcggcgacagc
agcgccgagtga
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