Serpentinimonas raichei: SRAA_0541
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Entry
SRAA_0541 CDS
T03614
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor, superfamily II helicase
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cbaa
Serpentinimonas raichei
Pathway
cbaa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cbaa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SRAA_0541 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cbaa03400
]
SRAA_0541 (mfd)
Enzymes [BR:
cbaa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SRAA_0541 (mfd)
DNA repair and recombination proteins [BR:
cbaa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SRAA_0541 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
AAA_30
ERCC3_RAD25_C
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
BAO80395
UniProt:
A0A060NHX1
LinkDB
All DBs
Position
complement(539196..542858)
Genome browser
AA seq
1220 aa
AA seq
DB search
MHLPPLSPGKRLQLPRPIGSADALLLAQLAERERRAGRLTAVVCADAADAQRLLDEIPFF
APGLRCALFPDWETLPYDSFSPHQDLISERLATLWRIVQRDRALGADVVLIPATTALYRL
APPAFLAAYSFEFKLQQQLDAARLKAQLTLAGYQHVSQVVGPGEYAVRGSLIDLFPMGSA
LPYRIDLFDDEIDSIRTFDPDTQRSLHPVPEVRLLPGREFPLDEAARSQFRARWRELLEG
DPSRSRLYKDMGNGVASAGIEYYLPLFFDATATVFDYLGSATTLVLHGELEPAFQRFALD
TRERYRLALGDPERPPLPPELLFLDAEGFYVAAKALAQLALRPAKESEQPDPSSAWAQTL
PDLAAQRAATDPLERLKAHLAACRTWGVESENRPQREQFAPGSPPHSPAMGPEDGAKWAA
AVDLQPTIPRSDRLLKHSPRRALLLAESEGRRASLLDFLRASGLNPPLFDSLAAFQTSPA
PVGLATAALASGFAWLPTGIDFVTETELFATAPGTRRRKKQEQVSDVEALIKDLSELQLG
DPVVHSQHGIGRYRGLVNLDLGEKTADGSPALQEFLHLEYASAAVLYVPVSQLQLISRYT
GVSADEAPLHRLGSGQWDKARRKAAEQVRDAAAELLNLYARRAAREGHAFRFPAQDYEAF
ANDFGFEETPDQKAAIHAVIQDLISPRPMDRLVCGDVGFGKTEVALRAAFVAVSGGKQVA
FLAPTTLLAEQHYQTLQDRFSNWPVKIAEMSRFRSAREISAALQGIRAGTVDIVVGTHKL
LSEKTQFKNLGLLIIDEEHRFGVRHKEAMKALRAEVDVLTLTATPIPRTLGLALEGLRDL
SVIATAPQRRLSIKTFVRNEGKGVIREAVLRELMRGGQVYFLHNEVETIENRRSQLAELL
PEARIAIAHGQMPERELERVMRDFVAQRHNLLLCSTIIETGIDVPSANTILISRADKFGL
AQLHQLRGRVGRSHHQAYAYLMVPEIDSLSKAAQQRLEAIGQMEALGSGFYLAMHDLEIR
GAGEVLGENQSGNMLEVGFQLYHEMLAEAVDALKAGREPDLLSPLGATTDINLHAPALLP
NDYCGDVHLRLSLYKKLASAKTSAQIDTLLEEIVDRFGKLPAPTQTLIDVHRLRVLAAPY
GVQKVDATPGLILISFKPNPPIEPQRIIELVQKNRHIKLAGNDKLRIERALPEAKDRAQL
VRDVLRALGPPLAVSQTPSV
NT seq
3663 nt
NT seq
+upstream
nt +downstream
nt
atgcacctgccccccctgagccccggcaagcgcttgcagttgccgcgccccataggcagc
gccgacgccttgctgctggcgcaactggccgagcgcgagcgccgcgctggccggctcacc
gccgtggtctgcgccgacgccgccgacgcccagcgcctgctcgacgaaatccccttcttc
gcgcccggcctgcgctgcgccctgttcccggactgggaaaccctgccctacgacagcttc
tcgccacaccaggacttgatctcggagcgcctggccacgctctggcgcatcgtgcagcgc
gaccgcgcactcggggccgacgtggtgctcatccccgccaccaccgcgctctaccggctc
gcgccaccggcctttctggccgcctacagtttcgaattcaagctgcaacaacagctcgac
gcggcccgcctcaaagcccagctcacgctggctggctaccagcacgtgagccaggtcgtc
ggcccgggcgaatacgcggtgcgcggcagcctgatcgacctgtttccgatgggctctgcg
ctgccctaccgcatcgacctgttcgacgacgagatcgactccatccgcaccttcgacccc
gacacccagcgcagcctgcacccggtgcccgaggtgcggctgctgccggggcgcgagttt
ccgctcgacgaagccgcacgcagccagtttcgtgcgcgctggcgcgaactgctcgaaggc
gacccgagccgcagccgcctctacaaagacatgggcaacggcgtggccagcgccggcatc
gagtactacctgccgctgtttttcgacgccaccgccaccgtgttcgattacctcggcagc
gccaccacgctggtgctgcacggcgagctcgaacccgccttccagcgctttgcgctcgac
acgcgcgagcgctaccgcctcgcccttggcgacccggagcgcccaccgctgccgcccgaa
ctgctgttcctcgacgccgaaggcttttatgtggcggccaaggcgctggcgcaactggcg
ctgcgaccggccaaggaatctgagcagccagacccgagcagcgcctgggcgcagaccctg
cccgacctcgcggcccagcgcgccgccaccgacccgctggagcgcctcaaggcccatctg
gcagcctgtcggacttggggcgtcgagagcgaaaatcggccccagcgagaacagtttgcg
ccgggttcgccgccccatagcccggctatggggccagaagacggtgcaaaatgggccgct
gcggtcgatttgcagccgactatccctaggtccgacaggctgctaaagcacagcccccgg
cgcgccctgctgctggccgagagcgagggccggcgcgccagcctgctcgacttcctgcgc
gccagcggcctgaatccgccgctgttcgactcgctggccgccttccaaaccagcccggcc
cccgtcggcctggccaccgccgcgctggccagcggctttgcctggctacccaccggcatc
gacttcgtcaccgagaccgagctctttgccaccgcacccggcacgcggcggcgcaaaaaa
caggagcaggtcagcgacgtcgaagcgctgatcaaagacctgagcgaactccaactcggc
gaccccgtggtgcacagccagcacggcatcggccgctaccggggcctggtcaacctcgat
ctgggcgaaaaaacggccgacggcagccccgcgctgcaagagtttttgcacctcgaatac
gccagcgcagcggtgctctacgtgccggtgagccagttgcagctcatcagccgctacacc
ggcgtgagcgccgacgaagcgccgctgcaccgcttgggttccggccagtgggacaaggcc
cggcgcaaggccgccgaacaggtgcgcgacgccgccgccgagctgctcaacctctacgcc
cgccgcgccgcgcgcgagggccacgcctttcgctttccggcgcaagactacgaggccttc
gccaacgactttggcttcgaagaaacgcccgaccaaaaagccgccatccacgccgtcatc
caggacctcatcagcccgcgcccgatggaccggctggtctgcggcgacgtcggctttggc
aagaccgaagtcgccctgcgcgccgccttcgtggccgtcagcggcggcaaacaagtcgcc
tttttggcccccaccaccctgctggccgagcagcactaccaaacgctgcaagaccgcttt
tccaactggccggtaaaaatcgccgaaatgagccgctttcgcagcgcgcgcgaaatcagc
gccgccctgcaaggcatccgcgccggcacggtggacatcgtggtcggcacgcacaagctc
ttgagcgaaaaaacccagttcaaaaacctcggcctgctcatcatcgacgaggaacaccgc
ttcggcgtgcgccacaaagaggccatgaaagcgctgcgcgccgaagtcgatgtgctcacc
ctcaccgccaccccgatcccgcgcaccctcgggctggcgctggaagggctgcgcgacctg
agcgtgatcgccaccgcgccgcagcgccgcctgtccatcaaaacctttgtgcgaaacgag
ggcaagggcgtgatccgcgaagcggtgctgcgcgagctgatgcgcggcgggcaggtctat
tttttgcacaacgaagtcgaaaccatcgaaaaccgccgcagccaactggccgagctgctg
cccgaggcgcgcatcgccatcgcccacggccagatgcccgaacgcgaactcgagcgcgtg
atgcgcgacttcgtggcccagcgccacaacctgctgctgtgctcgaccatcatcgaaacc
ggcatcgacgtgcccagcgccaacaccatcctcatcagccgcgccgacaagtttgggctg
gcgcagttgcaccagttgcgcggccgcgtcgggcgcagccaccaccaagcctacgcctac
ctgatggtgcccgagatcgacagcttaagcaaagcggcgcagcagcggctggaagccatc
gggcagatggaggcgctgggcagcggtttttacctcgccatgcacgacctcgaaatccgt
ggcgcgggcgaggtgctgggcgaaaaccagagcggcaacatgctcgaagtcggttttcag
ctctaccacgagatgctggccgaagccgtcgatgcgctcaaggccgggcgcgaacccgac
ctgctcagccccctgggcgccaccaccgacatcaacctgcacgccccggccctgctgccc
aacgactactgcggcgacgtgcacctgcgcctgagcctgtacaaaaagctcgccagcgcc
aagaccagcgcgcagatcgacaccctgctcgaagaaatcgtggaccgcttcggcaagctg
cccgcgcccacccagaccctgatcgacgtgcaccgcctgcgcgtgctcgccgccccctac
ggcgtgcaaaaagtcgatgccacaccgggcctgatcctgatcagtttcaagcccaacccg
cccatcgagccgcagcgcatcatcgaactggtgcaaaaaaaccgccacatcaaactggcc
ggcaacgacaagctgcgcatcgaacgcgccctgcccgaagccaaagaccgggcgcaactg
gtgcgcgacgtgctgcgcgcgctcgggccgccgctggccgtgtctcagacccctagcgta
taa
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