Serpentinimonas raichei: SRAA_1230
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Entry
SRAA_1230 CDS
T03614
Name
(GenBank) superfamily II DNA and RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cbaa
Serpentinimonas raichei
Pathway
cbaa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cbaa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SRAA_1230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbaa03019
]
SRAA_1230
Enzymes [BR:
cbaa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SRAA_1230
Messenger RNA biogenesis [BR:
cbaa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SRAA_1230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
BAO81084
UniProt:
A0A060NQ92
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All DBs
Position
1319786..1321639
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AA seq
617 aa
AA seq
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MTFDELNLAPALLDAVREQGYTQPTPVQAQAIPLVLAGHDLLAGAQTGTGKTAAFTLPLL
QRLHAGQAGPEGHAGHEPPKRGQPRPIRALVLTPTRELAAQVEESVRTYGKHLQLKSTVI
FGGVGMNPQIDKLARGVDVLVATPGRLLDLVDQGRLDLSKVEILVLDEADRMLDMGFIHD
VKKILRLLPQNKQSLLFSATFSDEIRELANGLLRSPKHIQVTPPNTTVQRIVQTIHPVGR
GKKKALLAHIIKEHDWSQVLVFTRTKFGANNVADYLNAHGVGALALHGNKSQSARTQALA
DFKSGTIRALVATDIAARGIDIDDLPHVVNYDIPNVCEDYVHRIGRTGRAGAEGAAVSLV
SLDEEGFMMAIEKFTKQQLAVQIFPDFMPEADEKAEPIAMGRQTLWGGAGKPPSRDVMAA
AGRAARKEMTDRVRDSKGGARTGRPAGGAPARSGAGPARVAPARTAPARVAAAPTFHDDD
FDDDAQPPRHADPLAPSRLAHAPGRRRNGGGAAPAGGRNQAPGSGTGPRQGGPRQGPGQA
QPGQARSRSAGSAGAGGPGSPARQPDPLRTGIDTLGQRGGGNRSRTGGGGQGQGQGGGGG
GGGGGIDPLRTRFGRIK
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atgacttttgacgaactgaacctcgccccggctctgctggatgccgtgcgcgagcaaggc
tacacccaacccaccccggtgcaggcgcaagccatccccttggtgctggccggccacgac
ctgctggctggcgcccagaccggcaccggcaaaaccgccgccttcacgctgccgctgctg
cagcgcctgcacgctggccaagccggccctgaaggccatgccggccatgagccccccaaa
cgcggccagccgcgccccattcgcgccctggtgctcacccccacccgcgaactggcggcg
caggtggaagaatcggtgcgcacctacggcaagcacctgcagctcaaatccaccgtgatt
tttggcggggtcggcatgaacccgcagatcgacaaactggcccggggcgtcgatgtgctg
gtggccaccccggggcggctgctggacctggtggaccaaggtcgcctggatttgtccaag
gtggaaattctggtgctcgacgaagccgaccgcatgctcgacatgggcttcatccacgac
gtgaagaaaatcctgcgcctgctgccacaaaacaagcagagcctgctgttttcggccacc
ttcagcgacgagatccgcgaactcgccaacggcctgctgcgcagcccgaagcacatccaa
gtcacgccgcccaacaccacggtgcagcgcatcgtgcagaccatccacccggtcgggcgc
ggcaagaaaaaagcgctgctggcgcacatcatcaaagagcacgactggagccaggtgctg
gtgtttacgcgcaccaagtttggcgccaacaacgtggccgactacctcaatgcccacggc
gtcggcgcgctggcgctgcacggcaacaagagccagagcgcgcgcacccaggcgctggcc
gacttcaagagcggcaccatccgcgccttggtggccaccgacatcgctgcgcgcgggatc
gacatcgacgacttgccgcacgtggtcaactacgacatccccaatgtgtgcgaggactac
gtgcaccgcatcggccgcaccggccgcgctggggccgaaggggcggcggtgagcctggtg
agcctggacgaagaaggcttcatgatggcgatcgagaagttcaccaagcaacagcttgcg
gtgcagatcttccccgatttcatgcccgaagccgacgaaaaagccgaacccatcgccatg
gggcgccaaaccctctggggcggggcgggcaaaccacccagccgcgatgtcatggctgcc
gccgggcgcgccgcgcgcaaagagatgaccgaccgcgtgcgcgacagcaagggcggcgcg
cgcactggccgaccggcgggaggcgcgccagcccgatccggcgcgggccccgcgcgggtt
gcgccagcgcggacggcgcctgcgcgggttgcggcagcccccaccttccacgacgacgac
ttcgacgacgacgcccagcccccgcgccacgccgaccccttggccccgtcccggctggcc
catgcccccggacggcgccgcaacggtgggggcgctgcccctgctggcgggcgcaaccag
gcaccgggttcgggcaccgggccacgccagggcggtccgcgccaaggtccgggtcaagct
cagccgggccaggcacgcagccgaagcgccggcagtgctggcgcgggcggccccggcagc
ccggcacgccagcccgacccgctgcgcaccggcatcgacaccttgggccagcgcggcggc
ggcaaccgttcacgcaccggcggcggtggccagggccaaggccaaggcggtggtggcggc
ggtggtggtggcggtatcgaccccctgcgcacccgctttgggcgcatcaaataa
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