Serpentinimonas raichei: SRAA_1271
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Entry
SRAA_1271 CDS
T03614
Symbol
rho
Name
(GenBank) transcription termination factor
KO
K03628
transcription termination factor Rho
Organism
cbaa
Serpentinimonas raichei
Pathway
cbaa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cbaa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SRAA_1271 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cbaa03021
]
SRAA_1271 (rho)
03019 Messenger RNA biogenesis [BR:
cbaa03019
]
SRAA_1271 (rho)
Transcription machinery [BR:
cbaa03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
SRAA_1271 (rho)
Messenger RNA biogenesis [BR:
cbaa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SRAA_1271 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
AAA
AAA_25
S1CSD-TOTE-2
ATPase_2
ResIII
Fungal_virus_P2_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BAO81125
UniProt:
A0A060NJ72
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All DBs
Position
1361860..1363122
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AA seq
420 aa
AA seq
DB search
MHLNELKALHVSEVLKQADALEIENTGRMRKQELMFAIIKKRAKTGEQVFADGVLEVLPD
GFGFLRNMDTSFTASTDDIYISPSQIRRFNLHTGDMIEGEVRTPKDGERYFALNKLDKIN
GLSPEHNKHKVMFENLTPLFPQVQMRLEREIKTEENITGRVIDLIAPIGKGQRGLIVAPP
KSGKTVMMQTIAHALAANYPEVTLMVLLVDERPEEVTEMQRTVKGEVISSTFDEPATRHV
HVAEMVIERAKRLVELKKDVVILLDSITRLARAYNNVLPSSGKVLSGGVDANALQRPKRF
FGAARNVEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSELHLDRRLYEKRVFPAVQL
NRSGTRREELLLAPEILQKTRILRQFMYNMDEIESMEMVLKNMRQTKNNHEFFDLMRRGG
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgcacctcaacgaactcaaggccttgcacgtctcggaagtgctcaagcaggccgatgcg
ctggaaatcgaaaacaccggccgcatgcgcaaacaagagctgatgtttgccatcatcaaa
aagcgcgccaaaaccggcgagcaggtgtttgccgacggcgtgctcgaggtgctgcccgac
ggttttggtttcctgcgcaacatggacaccagcttcaccgcctccaccgacgacatctac
atctcgcccagccagatccggcgcttcaacctgcacaccggcgacatgatcgaaggcgag
gtgcgcacccccaaagacggcgagcgctacttcgccctcaacaagctcgacaagatcaac
ggcctgtcgcccgagcacaacaagcacaaggtgatgttcgagaacctcacgccgctgttt
ccgcaggtgcaaatgcggctcgagcgcgagatcaagaccgaggaaaacatcaccggccgc
gtgatcgacctgatcgccccgatcggcaagggccagcgcggcctgatcgtggccccgccc
aagagcggcaaaacggtgatgatgcaaaccatcgcgcacgccctggccgccaactacccc
gaagtcacgctgatggtgctgctggtcgatgagcgccccgaagaagtgaccgagatgcag
cgcaccgtcaagggcgaagtgatctcctccaccttcgacgaacccgccacgcgccacgtg
cacgtggccgaaatggtgatcgagcgcgccaagcgcttggtcgagctgaaaaaagacgtg
gtgatcctgctcgactcgatcacccggctggcgcgcgcctacaacaacgtgctgcccagc
tcgggcaaggtgctctcgggcggtgtcgatgccaacgccctgcagcgcccgaaacgcttt
tttggcgcggcgcgcaacgtggaagaaggcggctcgctgaccatcatcgccaccgccctg
atcgacaccggcagccgcatggacgaggtgatcttcgaagaattcaagggcaccggcaac
tccgagctgcacctggaccgacgcctgtacgaaaaacgcgtgttcccggcggtgcaactc
aaccgcagcggcacccggcgcgaggagttgctgctggcgcccgagattttgcagaaaacc
cgcatcctgcgccagttcatgtacaacatggacgagatcgaatccatggaaatggtgctc
aaaaacatgcgccagaccaaaaacaaccacgagttcttcgacctgatgcgccgcggcggt
tga
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