Serpentinimonas raichei: SRAA_1504
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Entry
SRAA_1504 CDS
T03614
Name
(GenBank) ribonuclease G and E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
cbaa
Serpentinimonas raichei
Pathway
cbaa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cbaa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SRAA_1504
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbaa03019
]
SRAA_1504
03009 Ribosome biogenesis [BR:
cbaa03009
]
SRAA_1504
Enzymes [BR:
cbaa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
SRAA_1504
Messenger RNA biogenesis [BR:
cbaa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SRAA_1504
Ribosome biogenesis [BR:
cbaa03009
]
Prokaryotic type
rRNA processing factors
SRAA_1504
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
BAO81358
UniProt:
A0A060NPD9
LinkDB
All DBs
Position
1622800..1625979
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AA seq
1059 aa
AA seq
DB search
MKRMLINATQSEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDY
GEDRQGFLPFKEIGRQYFQGNASPAQARIQDVIKEGQELLVQIEKEERGNKGAALTTFVS
LAGRYVVLMPNNPRGGGVSRRIEGDERAELKAVLDQLDYPGGMSIIARTAGIGREAGELQ
WDLNYLLKLWNAIDGAAKAGKGAFLIYQESSLVIRAIRDYFNSQIGEILIDTDDIYEQAH
QFMSHVMPEHGHRVKRYRDDAPLFSRFQMEHQIETAYSRTVQLPSGGAIVIDQTEALVAV
DVNSARSIKGGDIEETALRTNLEAADEVARQARLRDLGGLLVIDFIDMEESRNRRDVENR
LRDALRQDRARVQFSAISKFGLLEMSRQRLRPTLAEGASIPCPRCGGSGHIRDTESSALQ
ILRVIQEESLKDGTAAVFVQVPVEVASFLLNEKRTEITKIELRQRINVLLVPNKSLDTPH
YKLERLKHDDPRLDKLDASYRLAEEIDDVATVTRRSHERANKQEPLIKGVLPDGPAPQAA
AKASPAEAPAAPAAPVAAAAAGATHAATPRTGGAAQAPTSAAAPSGFMAWFKRLLGLEPS
AAPAADSVVPSTPASPIPATASARAELGRGGRGGAGRGRNGERGERGERGDRGPRPEGAS
EAAGRGGERGSRGERSDRGERPARPEGRIEGRADSATEGREPRAERGNARTEAGERTERG
EARRPARPDREGRSEREGREPREPREGRREGSEAQASSAPANLDGDMSPASTGTGSETPR
RERGGRGRGGEGRRGATIPVNGVDSVASSAEEASAERPLTDAASTDASGTPQLPSEREAE
DTGSRRRSRDRYGRDRRDRTAGTEASDSADNTDVSDDSPANAPAATPAAAAVVATAAEAS
QEVEAQPRSYFSRASSQAAADAPAAADAPAAPSSAAAPAPSPRAVTDTDSAALPAAAPVP
APAPAVAPTSTATVATEQQPSAQASTPYVLPLTELEALASQVGLQWVQSDAARVEQARAA
SAAQAPAPHAPRQPKPVQMPGDGPLVLVETRRDLRQLNF
NT seq
3180 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgctgatcaacgccacccagtccgaagaacggcggttggccatcgtagac
gggcaaaaactgctcgactacgaaatcgaaatcgaagggcgcgagcagcgcaaaggcaat
atctacaaggccgtggtgacgcgcgtcgagccttcgctggaagcctgcttcgtggattac
ggcgaagaccgccaaggctttttgccgttcaaggaaatcgggcgccaatacttccaaggc
aatgcctcgcccgcccaggcgcgcatccaggacgtgatcaaagaaggccaggaactgctg
gttcaaatcgaaaaagaagagcgcggcaacaaaggcgcggccctcaccaccttcgtcagc
ttggccgggcgctacgtggtgctgatgcccaacaacccgcgcggcggtggcgtgagccgg
cgcatcgaaggcgacgaacgggccgaactcaaagcggtgctggaccagctcgactacccg
ggtggcatgagcatcatcgcgcgcaccgccggcatagggcgcgaagcgggtgaattgcaa
tgggacttgaactacctgctcaagctctggaacgccatcgacggcgccgccaaagccggc
aagggcgcgttcctgatttaccaggaatcgagcctggtgatccgcgccatccgcgactat
ttcaacagccagatcggtgaaatcctgatcgacaccgacgacatctacgagcaagcgcac
cagttcatgagccacgtgatgcccgaacatgggcatcgggtgaagcgctaccgcgacgac
gcgccgctgttttcgcgcttccagatggagcaccagatcgaaaccgcctacagccgcacg
gtgcaactgcccagcggtggcgcgatcgtgatcgaccagaccgaagcgctggtggcggtg
gacgtgaactcggcgcgctccatcaagggcggcgacatcgaggaaaccgcgttgcgcacc
aacctcgaggccgccgacgaagtggcgcgccaagcccggctgcgcgatttgggcggcctg
ctggtgatcgacttcatcgacatggaagaatcgcgcaaccggcgcgatgtagaaaaccgc
ctgcgcgatgcgctgcgccaagaccgcgcccgggtgcagttcagcgccatcagcaaattt
ggcctgctcgaaatgagccgccagcgcctgcgccccaccttggccgaaggggcctccatc
ccctgcccgcgctgcggcggctcgggccacatccgcgacaccgagagctcggcgctgcaa
attttgcgcgtgatccaagaagaatcgctcaaagacggcaccgccgccgtgttcgtgcag
gtgccggttgaagtggcaagctttttgctcaacgaaaaacgcaccgagatcaccaagatc
gagctgcgccagcgcatcaacgtgctgctggtgcccaacaaatcgctcgacaccccacac
tacaagctcgaacgcctcaagcacgacgacccgcgcctcgacaagctcgacgccagctac
cggctggccgaagaaatcgacgacgtggccaccgtgacccggcgcagccacgagcgcgcc
aacaagcaagagccgctgatcaagggcgtgctgcccgacggcccggcgccgcaggctgcg
gccaaagccagcccggccgaggccccggctgcgccagcggctcctgtggctgccgccgca
gcgggcgcaacccatgccgccacgccgcgcactggcggcgccgcccaagcgcccacttct
gctgcagcgccgagcggtttcatggcctggttcaagcgcttgctgggcttggagccgagc
gccgcgccggctgcggacagcgtggtgccatccaccccggccagccccatacccgccacc
gcatctgcccgggccgagcttgggcgcggcggacgtgggggcgcaggccgcggccgcaat
ggcgaacgcggcgaacgcggcgagcgcggtgatcgtggtccgcggcctgaaggcgctagc
gaggccgcaggccgtggtggcgagcgcggcagccgcggtgagcgcagcgaccggggcgag
cgtcctgcccgccctgaaggccgcattgaagggcgtgccgattccgccaccgagggccgc
gagccccgcgccgagcgtggcaacgcccgcaccgaagccggcgagcgcaccgaacgcggc
gaggcacgccgccctgcgcgcccggatcgcgaaggccgcagcgaacgcgaaggccgtgag
ccacgcgaaccccgcgaaggccggcgtgagggcagcgaggcccaagccagcagcgcccct
gcgaacctagacggtgacatgagccctgccagcacaggcaccggcagcgagaccccacgg
cgtgagcgcggtgggcgtggccgtggtggcgaaggccgacgcggtgccaccatcccagtc
aacggggtcgattctgttgcatccagtgccgaggaggccagcgccgagcgccccttgacc
gacgctgcgtcaaccgatgcgtcgggcaccccgcagctgcccagcgagcgcgaggccgaa
gacaccggcagccgccgccgcagccgcgaccgctacgggcgcgaccggcgcgatcgcacc
gccggcaccgaagccagcgacagcgccgacaacaccgatgtgagcgatgacagccctgcc
aatgctcctgctgccacacctgctgccgcagcggttgttgcaactgccgccgaggccagc
caagaagtcgaggcgcaaccgcgctcctacttcagccgcgccagcagccaggctgcagcc
gatgcgcccgcagcagccgatgcacccgctgctcccagcagcgccgctgcgcccgcacca
agcccccgcgcagtgaccgacacggacagcgctgcgctgcctgcggcggcccctgtgccc
gcgccagcgccagcggtcgctcccacctcaactgccaccgtcgccaccgagcagcagccc
agcgcccaggccagcaccccctacgtgctgccgctgaccgagctcgaagcgctggccagc
caagtgggcttgcaatgggtgcagtccgacgccgcccgcgtcgagcaggcccgcgccgcc
agcgcggcccaagcgccagcgccgcatgcgccgcgccagcccaagccggttcaaatgccc
ggcgatggcccgttggtgctggtcgaaacccgccgcgacctgcgccaactgaacttttaa
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