Serpentinimonas raichei: SRAA_1540
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Entry
SRAA_1540 CDS
T03614
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
cbaa
Serpentinimonas raichei
Pathway
cbaa03030
DNA replication
cbaa03430
Mismatch repair
cbaa03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cbaa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SRAA_1540
03430 Mismatch repair
SRAA_1540
03440 Homologous recombination
SRAA_1540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cbaa03032
]
SRAA_1540
03400 DNA repair and recombination proteins [BR:
cbaa03400
]
SRAA_1540
Enzymes [BR:
cbaa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SRAA_1540
DNA replication proteins [BR:
cbaa03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SRAA_1540
DNA repair and recombination proteins [BR:
cbaa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SRAA_1540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
BAO81394
UniProt:
A0A060NR75
LinkDB
All DBs
Position
complement(1660553..1664161)
Genome browser
AA seq
1202 aa
AA seq
DB search
MSDLPDSPAAPAFVHLRLHTEFSVVDGTTRIDAVAAAAAADGQPALAITDLNNLFGAVKF
YQAARSQGVQPILGAEVLLQGLGPPPAAGAGSAAPPIWPRLLLLAQNHTGYLNLCELLAR
GWSSNLLRDQGVLKWDWLRQHHEGLIVLSGAAAGPVGQALLAGDEAAAAALAQQLAGTFA
QRFYLEVQRAGRADDERHLRATVPLAARLGLPLVATHPVQFLQADDFQAHEARVCIAEGE
ILGNPRRPRRFTREQYFKTGADMAALFADLPGALAQTLEIARRCSLRLTLGKPQLPAFPI
PPVDGQQLGTEDYFRHVAQQGLQQRLQQLYTDAAERARQQERYQERLEFELGTIVKMGFP
GYFLIVSDFILWAKAHGCPVGPGRGSGAGSLVAYALQITDLDPLRYQLLFERFLNPERVS
MPDFDIDFCQANRDRVIDYVKGKYGLAAVSQIATFGTLAARAAIRDVGRVLDFPYGFCDG
ISKLIPNKPGQSVTLQYPPRPKPEGDKTLYAIEMEPLLAERIAKEDEVRQLIELAQKLEG
LTRNVGMHAGGVLIAPGKLTDFCPLYQQPGSNAAVSQYDKDDVEAIGLVKFDFLGLATLT
ILEQAKELIVQRHPQQADFAYETLALDDAATYRLFQEGKTEAVFQFESRGMQGMLRDAKP
SRLEDLIALNALYRPGPMDLIPSFVARKHGREVVQYPHPLLEQVLSETYGIMVYQEQVMQ
TAQILGGYSLGGADLLRRAMGKKKPEEMAQQRLVFRQGAAGQGLSPAQADEVFDLMEKFA
GYGFNKSHAAAYSLLAYHTAWIKVHYTAEFFCANLTLEMDDTDKLKLLVEDAQRFNITFE
PPDVNLGGYRFDPVSAQCIRYGLGAVKGTGQQAIEAIVAARQGHGAGPRATVVGPFSSLF
DFCARIERGRLNKRTVEALVKAGAFDRLHPDRAAALASVELAFDFAQAQQANALQGGLFD
LPGQAGGHGASDQEPALAEAPPWSVRERLTHEKAALGFYFSGHLFDQAADEVRRIARTPL
ADVTESREPQLLAGIVGDLRVINGQRGKVALFKLDDRSAVLEASADDALLQAHRHLLQDD
ELVLLQVLVQPDRFSGGLRLKVQQVWDLPAARCRFGKYLRVAVGPTQRPEVAALLQAHPP
RRHQTELGEVLRGLPLRLEVEFETVRATLQLDPQRAQCYPCDAALAAWRTQAHQQRAEVV
YD
NT seq
3609 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatttgcccgattcacccgctgctcccgccttcgtccacttgcgcctgcacacc
gagttttcggtggtcgatggcaccacgcgcatcgacgcggtggcggccgccgccgccgcc
gatggccagccggcgctggccattaccgacctcaacaacctctttggcgccgtcaagttc
taccaggcggcgcgcagccaaggcgtgcagcccatcctcggggccgaggtgctgctgcag
gggctgggcccgccgcccgctgcgggtgcaggcagcgccgcgccgcctatttggccgcgc
ctgctgctgctggcgcaaaaccacaccggctacctgaacctgtgcgagctgctggcgcgt
ggctggagcagcaacctgctgcgcgaccagggcgtgctcaagtgggactggttgcgccag
caccacgagggcctgatcgtgctcagcggggctgctgccgggccggtggggcaggcgctg
ctggcgggcgatgaagccgccgccgccgcgctggcgcagcaactggcgggcacctttgcg
cagcgtttctacctcgaagtgcagcgcgccggccgcgccgacgacgaacgccacctgcgc
gccaccgtgcccttggcggcgcggctggggttgccgctggtggccacgcacccggtgcag
ttcctgcaggccgacgattttcaggcgcacgaggcgcgcgtgtgcatcgccgaaggcgag
attttgggcaacccgcgccggccccggcgtttcacgcgcgagcagtatttcaagaccggt
gccgacatggcggccctgtttgccgacctgcccggcgcgctggcgcaaacgctcgagatc
gcgcgccgctgcagcctgcggctcacgctgggcaagccgcagttgccggccttccccatt
ccgcccgtagatgggcagcaactgggcaccgaagactactttcgccacgtcgcgcagcaa
ggcttgcagcagcgcctgcagcagctttacaccgatgcagccgagcgcgcgcgccagcag
gagcgctaccaagagcggcttgaattcgagctcggcaccatcgtcaaaatgggttttccg
ggctactttctgatcgtctcggacttcatcctctgggccaaggcgcacggctgcccagtc
gggccggggcgcggctctggggccggttcgctggtggcctacgcgctgcaaatcaccgac
ctcgacccgctgcgctaccaattgctgttcgagcgctttttgaaccccgagcgcgtctcg
atgcccgacttcgacatcgacttctgccaagccaaccgcgaccgcgtgatcgactacgtc
aagggcaaatacgggctggcggcggtgagccaaatcgccacctttggcaccctggcggcg
cgcgcggcgatccgcgacgtggggcgcgtgctcgatttcccctacggtttttgcgacggc
atctccaagctcatccccaacaaacccggccagagcgtgacgctgcaatacccgccccgg
cccaagcccgaaggcgataaaaccctgtacgcgatcgagatggagccgctgctggccgag
cgcatcgccaaagaagacgaggtgcgccaactaatcgagctggcgcaaaagctcgagggc
ctgacgcgcaacgtgggcatgcacgccggcggggtgctgatcgcgcccggcaaactcacc
gatttttgcccgctctaccagcagcccggcagcaacgccgccgtgagccagtacgacaaa
gacgatgtggaagcgatcggtctcgtcaagttcgacttccttggcctggccaccctcacc
attctggagcaggccaaagagctgatcgtgcagcgccacccgcagcaggctgattttgcc
tacgaaacgctggcgctcgacgatgccgccacctaccgcttgttccaggaaggcaaaacc
gaggccgtgttccagttcgagagccgcggcatgcagggcatgttgcgcgacgccaaacca
agccggctcgaagacctgatcgccctcaacgcgctctaccgccccggcccgatggacctg
atccccagcttcgtggcgcgcaagcacgggcgcgaggtggtgcaatacccgcacccgctg
ctggagcaggtgctgtccgagacctacggcatcatggtctatcaagagcaggtgatgcag
acggcgcagatcctgggcggctacagcctgggcggcgccgacctgctgcggcgcgccatg
ggcaagaaaaagcccgaagaaatggcgcagcagcggctggtctttcgccagggggcggcc
ggccagggcctgagcccggcgcaggccgacgaggtgtttgacctgatggaaaagttcgca
ggctacggcttcaacaagtcgcacgccgccgcctactcgctgctggcctaccacaccgcc
tggatcaaggtgcactacacggccgaattcttctgcgccaacctgacgctggagatggac
gacaccgacaagctcaagctgctggtggaagacgcgcagcgcttcaacatcaccttcgag
ccgccggacgtgaacctgggcggctaccgcttcgatccggtgagcgcgcagtgcatccgc
tacggcctcggggccgtcaagggcaccgggcagcaggccatcgaggccatcgtggccgcg
cgccaaggccatggcgcggggccgcgggccacggtggtggggccgtttagcagcctgttc
gatttttgcgcccgcatcgaacgcggccgcctcaacaagcgcaccgtcgaggcgctggtc
aaggccggcgccttcgaccgcctgcacccggatcgcgccgccgcgctggcctcggtcgag
ctggcctttgattttgcccaggcgcagcaggccaacgccttgcagggcggcttgttcgac
ctgcccggccaagccggcggccacggcgccagcgaccaagagccggcgctggccgaggcg
ccgccgtggagcgtgcgcgagcgcctgacacacgaaaaagccgcgctcgggttttacttt
tcgggccacctgttcgaccaagccgccgacgaagtgcggcgcatcgcccgcacccccttg
gccgacgtgaccgaaagccgcgagccgcagctgctggccggcatcgtgggcgatttgcgc
gtgatcaacggccagcgcggcaaggtggcactattcaagctcgacgaccgcagcgccgtg
ctagaagccagcgccgacgacgcgctgctgcaggcgcaccgccacctactgcaagacgac
gaactggtgctgctgcaagtgctggtgcagcccgaccgtttttcgggcgggctgcgcctc
aaggtgcagcaggtgtgggacttgcccgctgcccgctgccgctttggcaaatacctgcgc
gtggccgtggggcccacccagcgccccgaggtcgctgcgctgctgcaagcgcacccgccc
cggcgccaccagacagagctgggcgaggtgctgcgtggcctgccgctgcgcctcgaagtg
gaattcgagaccgtgcgcgccacgctgcagctcgaccctcagcgcgcccagtgctacccc
tgcgacgccgcgctggccgcctggcgcacccaagcgcaccagcagcgcgccgaggtggtg
tacgactga
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