Serpentinimonas raichei: SRAA_1603
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Entry
SRAA_1603 CDS
T03614
Name
(GenBank) superfamily II DNA and RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cbaa
Serpentinimonas raichei
Pathway
cbaa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cbaa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SRAA_1603
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbaa03019
]
SRAA_1603
Enzymes [BR:
cbaa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SRAA_1603
Messenger RNA biogenesis [BR:
cbaa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SRAA_1603
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
BAO81457
UniProt:
A0A060NJ36
LinkDB
All DBs
Position
complement(1721576..1723057)
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AA seq
493 aa
AA seq
DB search
MNPAFSELSLAEPLARAVAELGFSSMTPIQAQAIPVVLQGRDVMGAAQTGTGKTAAFSLP
LLQRLLKHASSSTSPARHPVRALVLLPTRELAVQVAQQIELYAKYTELRSTVVFGGMDMK
PQTAELKRGVEVLVATPGRLLDHIEAKNCVLNQVEYVVLDEADRMLDIGFLPDLQRILSY
LPKQRTTLLFSATFSTEIKRLASSYLQDPVTIEVARSNATAATIEQRFYRVEENDKIQAL
KQVLRERTIGQAFVFVNSKLGCARLARSLEHDGLNSTALHGDKSQDERLKALDSFKKGEV
QLLVCTDVAARGLDIKDVPAVFNFDLPFNAEDYVHRIGRTGRAGASGLSFSFVCGRDTKS
LAELEKLLGKKVEVEPLELESDRRRFGGDPGRINDGQRLWHDPRGSAEARALRPPPRAAR
PAADPFFEQPYQPKLAPEAKPEWEQQSAKAGAGTRSVSPFIRTKRKVAALFKAATPVAAG
AECERQPDPEPVA
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
atgaatcctgctttttctgaactttccttggccgagcccttggctcgtgctgtagccgaa
ctcggcttttcctccatgacgcctatccaggcgcaggcgattccggtggtgctgcaaggc
cgcgacgtgatgggcgcagcccagaccggcaccggcaaaaccgccgccttctcgctgccg
ctgctgcagcgcctactcaaacacgccagctcctccacatcgccagcgcggcacccggtg
cgcgcactggtgttgctgcccacgcgcgagctggcggtgcaggtggcgcagcaaatcgag
ctctacgccaaatacaccgagctgcgcagtacggtggtgtttggcggcatggacatgaag
ccccaaaccgccgagttgaagcgaggcgtcgaggtgctggtggccaccccagggcgcttg
ctggaccacatcgaagccaaaaactgcgtgctcaaccaggtcgagtacgtggtgctcgac
gaggccgaccgcatgctcgacatcggctttttgcccgatctgcagcgcatcctctcctac
ctgcccaagcaacgcaccacgctgctgttctcggccactttctcgaccgaaatcaagcgt
ctggcttcgagctacctgcaagacccggtgaccatcgaggtggcgcgctccaacgccacc
gccgccaccatcgagcagcgcttttaccgggtagaagaaaacgacaagatccaagcgctc
aagcaggtgctgcgcgagcgcacgatcgggcaggcctttgtgttcgtcaacagcaagctc
ggctgtgcgcggctggcgcgctcgctggagcacgatggcctcaacagcaccgccttgcac
ggcgacaagagccaggacgaacgcctcaaggcgctcgattccttcaaaaagggcgaggtg
caactgctggtctgcaccgacgtggcggcgcgtgggctcgacatcaaagacgtgcccgcg
gtgttcaacttcgacctgccctttaacgccgaagactacgtgcaccgcatcggccgcacc
ggccgtgctggggcttcgggtttgtccttttcattcgtctgcgggcgcgataccaagtcg
ctggccgaactcgaaaaactgctgggcaaaaaagttgaggtggagccactggagctcgaa
tccgaccggcgccgcttcggtggcgacccgggtcgtatcaacgacggccagcgcctctgg
cacgacccgcggggcagcgccgaagcgcgtgctttgcgcccgccgccgcgtgccgcccgc
ccggccgccgaccccttctttgagcagccgtatcagcccaagctggcccccgaggccaag
cccgagtgggagcagcagtccgccaaggcgggagcgggcacgcgctcggtctcgcccttc
atccgcaccaagcgcaaggtggcggccttgttcaaggcggctaccccggtggctgccggc
gccgaatgcgagcgccagcccgaccccgaaccggtcgcctga
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