Serpentinimonas raichei: SRAA_2020
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Entry
SRAA_2020 CDS
T03614
Symbol
dapF
Name
(GenBank) diaminopimelate epimerase
KO
K01778
diaminopimelate epimerase [EC:
5.1.1.7
]
Organism
cbaa
Serpentinimonas raichei
Pathway
cbaa00300
Lysine biosynthesis
cbaa00470
D-Amino acid metabolism
cbaa01100
Metabolic pathways
cbaa01110
Biosynthesis of secondary metabolites
cbaa01120
Microbial metabolism in diverse environments
cbaa01230
Biosynthesis of amino acids
Module
cbaa_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
cbaa00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
SRAA_2020 (dapF)
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
SRAA_2020 (dapF)
Enzymes [BR:
cbaa01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.1 Acting on amino acids and derivatives
5.1.1.7 diaminopimelate epimerase
SRAA_2020 (dapF)
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GFIT
Motif
Pfam:
DAP_epimerase
Motif
Other DBs
NCBI-ProteinID:
BAO81874
UniProt:
A0A060NSM1
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Position
complement(2172299..2173174)
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AA seq
291 aa
AA seq
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MRIPFSKMQGAGNDFVVLDETRGRLGLTSAQYRRLADRHFGVGADQILSVRAAPHAGVDF
EYAIHNADGGEVENCGNGARCFARYVRERGLSLRPEVRVQTASGVLLLQWGNEGQVAVDM
GAPVFEPARIPFDAAGLQPRPCGGWQVWPMALPAFEAELSLLSMGNPHAVWRVPDTDTAP
VAQFGPLIERHPRFPNRVNVGFLQVLGRQQARLRVFERGVGETLACGTGACAAVVAGIRH
GWFDERVEVQLPGGALSVAWPVSRHGLAAPVHLSGPAETVFEGVIELPDLC
NT seq
876 nt
NT seq
+upstream
nt +downstream
nt
atgcgcattccgtttagcaaaatgcagggcgcgggcaacgactttgtcgtgctcgacgaa
acccgtggccgcttaggcctcacgtcggcgcagtaccgccgcttggcggatcggcacttt
ggcgtcggggccgaccagatcctgagcgtacgggcggccccgcacgccggggtggacttc
gaatacgcgatccacaacgccgatggcggcgaggtggaaaactgcggcaacggggcacgc
tgctttgcccgctacgtgcgcgagcgcggcctgagcctgcgccccgaggttcgggtgcaa
accgccagcggcgtgctgctgttgcagtggggcaacgaggggcaggtggcggtggacatg
ggcgcgccggtgttcgagcccgcgcgcattcccttcgatgccgccggcctgcaaccccgg
ccctgcgggggctggcaggtctggccaatggccctgccggcctttgaggccgaactctcg
ttgctttcgatgggcaacccgcacgcggtctggcgcgtgcccgacaccgacaccgcgccg
gtggcccagttcggacccctgatcgagcgccatccccgtttcccgaaccgcgtcaacgtc
ggttttctgcaagtgctggggcgccagcaggcgcggctgcgggtgtttgagcgcggcgtg
ggcgaaacgctggcctgcggcaccggcgcctgtgcggcggtggtggcgggcatccgccac
ggctggttcgacgagcgcgtcgaggtgcaactgccgggcggtgcgctgtcggtggcgtgg
ccggtgtcgcgccacgggctggccgcgccggtgcacctgagcggcccggccgaaaccgtg
ttcgagggcgtgatcgagctgcccgacctttgctaa
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