Serpentinimonas raichei: SRAA_2083
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Entry
SRAA_2083 CDS
T03614
Name
(GenBank) exoribonuclease R
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
cbaa
Serpentinimonas raichei
Brite
KEGG Orthology (KO) [BR:
cbaa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cbaa03016
]
SRAA_2083
Enzymes [BR:
cbaa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
SRAA_2083
Transfer RNA biogenesis [BR:
cbaa03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
SRAA_2083
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RNB
WHD_RNase_II
Myosin_N
Motif
Other DBs
NCBI-ProteinID:
BAO81937
UniProt:
A0A060NJY7
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All DBs
Position
complement(2252432..2254561)
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AA seq
709 aa
AA seq
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MYALFDEAGKLLAGRILSESESALQVELESGKRVKVKAALVLLRFAQPEPSALLQAAEAL
RPQIELELAWEFAPEAEFGFAELAAEYFQDPPTTAQQLAALLRLGEAPHYFRRAGKGRYK
KAPAEVVQQALAAIEKKRQIQAQTEAWAAELAAGQCPPAVAQQLYKILFRPDKNAPEYKA
VVHAARSSHTAPLLLLQRAGAIRNAYEFHWQRFLFDQFPKGVGFAALPPLPPLPENLPLA
TVQAFSIDDSSTTEIDDALSLQGLGGAEVTLGIHIAAPGLAIEPGGALDQVARQRLSTVY
MPGHKITMLPDAVVQAYTLDAGGARPALSLYLRLDAETLELRGSETRIEQVPIAHNLRHD
QLDQALSVDWLQNPAAAPGAPLPEAIVALRPQLAFLYRLALHCKARREAVRGKPETFTRP
DYTFALQDAPPEGPTGDERVQIGTRSRGAPLDLMVAEAMILANSTWGQWLADCGVPAIYR
SQASLAPGIKVRMGARALPHAGIGVACYAWSSSPLRRYTDLVNQWQLIACVRHGKAAALA
APFKPRDTALLVVISAFDAAYTAYAQFQNGMERYWTLRYLQQQQIGELSASVIKDGLVRA
DTLPLVLNAAGSAGLARGTPVRLRLGDIDLIGLEVSASVIEQLARTAPTGAESAEPEPDE
EDEAALAPALALAVDLDDDAESETLPPSDSASEVAEVAAPNEAAHKAAP
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
ttgtacgccctgtttgacgaagccggtaagttgctcgctggccgcatcctgtccgaatcc
gagtccgcgctgcaagtcgagctggagtcgggcaagcgcgtcaaggtcaaggccgccttg
gtgctgctgcgctttgcccagcccgagccgagcgcgctgctgcaggcggccgaggccctg
cggccgcagatcgagctcgagctggcgtgggagtttgcgcccgaggccgagtttggcttt
gccgaactggcggccgagtattttcaggacccgcccaccacggcgcagcaactcgccgcc
ttgttgcgcctaggcgaggcgccgcattattttcgccgcgccggcaaggggcgctacaaa
aaagccccggcggaggtggtgcagcaggcgctggcggcgatcgagaaaaagcgccagatc
caggcccagaccgaggcctgggcggccgagttggctgcgggccagtgcccgccggcggtg
gcccagcagctctataaaatcctgtttcggcccgataaaaacgcgcccgagtacaaggcc
gtggtgcacgccgcgcgcagcagccacaccgcccccttgctgctgctgcagcgcgcgggc
gccatccgcaatgcctacgaatttcattggcagcgctttttgttcgatcagttccccaag
ggcgtgggttttgcggcgctgccgcccctgccgcccttgcccgagaacctgccgctggcc
acggtgcaggcgttttcgatcgacgactccagcaccaccgaaatcgacgacgcgctcagc
ctgcagggcctgggtggcgccgaggtgacgctgggcatccacatcgcggcgccggggctg
gccatcgaacccggcggcgcgctcgatcaggtggcgcgccagcgcctgtccaccgtgtac
atgccggggcacaaaatcaccatgctgcccgacgcggtggtgcaggcctacacgctcgac
gccgggggcgcgcgcccggcgctgtcgctctacctgcggctggatgccgagacgctggag
ctgcgcggcagcgagacgcgcatcgagcaggtgccgatcgcgcacaacctgcgccacgac
cagctcgaccaggccctcagcgtcgactggctgcaaaaccccgctgcggcgcccggggcc
ccgctgcccgaagccatcgtcgccctgcgcccgcaactggcttttttgtaccggctggcg
ctgcactgcaaagcgcggcgcgaggcggtgcgcggcaaacccgagaccttcacccggccc
gactacacctttgccctgcaagacgcgccccccgaaggcccgacgggcgatgagcgggtg
cagatcggcacccgcagccgcggcgcgccgctggacctgatggtggccgaggccatgatt
ctggccaacagcacctggggccagtggctggccgactgcggcgtgcccgccatctaccgc
agccaggccagcctggcgccgggcatcaaggtgcgcatgggggccagggcgctgccgcac
gccggcatcggggtggcttgctacgcctggagcagctcgccgctgcgccgctacaccgat
ctggtcaaccagtggcaactgatcgcttgcgtgcgccacggcaaggcggccgcgctggcg
gcgcccttcaagccgcgcgacaccgccctgctggtggtcatcagcgccttcgacgccgcc
tacaccgcctacgcccagtttcaaaacggcatggagcgctactggacgctgcgctacctg
cagcaacagcagatcggcgagctcagcgccagcgtcatcaaagacgggctggtgcgcgcc
gacaccctgccgctggtgctcaacgccgccggcagcgcggggctggcgcgcggcaccccg
gtgcggctgcggctgggcgacatcgacctgattgggctcgaggtgtcggccagcgtgatc
gagcaactggcgcgcacggccccaactggcgccgagtccgctgaacccgagcccgacgag
gaggacgaagccgcgctggcccccgcgctggcgctggcggtggacctcgatgacgacgcc
gagtcggagacgctgccgccatccgacagcgcctctgaagttgcagaggtggcggcgccc
aacgaagcggcgcacaaagccgcgccttga
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