Serpentinimonas maccroryi: SMCB_0506
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Entry
SMCB_0506 CDS
T03627
Name
(GenBank) ribonuclease G and E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
cbab
Serpentinimonas maccroryi
Pathway
cbab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cbab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SMCB_0506
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbab03019
]
SMCB_0506
03009 Ribosome biogenesis [BR:
cbab03009
]
SMCB_0506
Enzymes [BR:
cbab01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
SMCB_0506
Messenger RNA biogenesis [BR:
cbab03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SMCB_0506
Ribosome biogenesis [BR:
cbab03009
]
Prokaryotic type
rRNA processing factors
SMCB_0506
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
BAO82734
UniProt:
A0A060NV00
LinkDB
All DBs
Position
complement(553102..556233)
Genome browser
AA seq
1043 aa
AA seq
DB search
MKRMLINATQSEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDY
GEDRQGFLPFKEIGRQYFQGNASPAQARIQDVIKEGQELLVQIEKEERGNKGAALTTFVS
LAGRYVVLMPNNPRGGGVSRRIEGDERAELKAVLDQLDYPGGMSIIARTAGIGREAGELQ
WDLNYLLKLWNAIDGAAKAGKGAFLIYQESSLVIRAIRDYFNSQIGEILIDTDDIYEQAH
QFMSHVMPEHGHRVKRYRDDAPLFSRFQIEHQIETAYSRTVQLPSGGAIVIDQTEALVAV
DVNSARSIKGGDIEETALRTNLEAADEVARQARLRDLGGLLVIDFIDMEESRNRRDVENR
LRDALRQDRARVQFSAISKFGLLEMSRQRLRPTLAEGASIPCPRCGGSGHIRDTESSALQ
ILRVIQEESLKDGTAAVFVQVPVEVASFLLNEKRTEITKIELRQRINVLLVPNKSLDTPH
YKLERLKHDDPRLDKLDASYRLAEEIDDVATVTRRSHERANKQEPLIKGVLPDGPAPQVA
AKASPGAGATGAAAVVPQAPTATPTTAASAGAAAHGVPAAASSGFMAWFKRLLGLAPAPE
AAPAAAPAARRAATAGPAATKAESPRGPRGGSGRGRGGERGERSERGERVERSNRAEGAA
EAGARTGEGRRGERTERPSRNEGRTEGRIEGTTEGRAERGGARTEAGERPERSETRRPNR
SERGERGERPEREGRPENTSTEAQLPSATGEADGQASASAPADNVRRERSRGGRGEGRRS
AAAADTSAAVADPTDADTSAQPALADGAVAPENGSSQPAGERENEGTGGRRRSRDRFGRD
RRERASTTEGTEGSDGTETSEGGTGYATPLATAAAATASNAAAEPSEQEDATPARSYFSR
ASSQPAPAAPTSSPTAASNATAKADAATAQQTDAARSQSQVPTPTAATAPAAPAPAPAPA
PAAASAPFVLPLPELEALAVQAGLQWVQSDPARIEQARAASAALVPTPQLPRQPKPVQLP
DDGPLVLVETRRDLRQLVLPHEG
NT seq
3132 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgctgatcaacgccacccagtccgaagaacggcggttggccatcgtagac
gggcaaaaactgctcgactacgaaatcgaaatcgaagggcgcgagcagcgcaaaggcaat
atctacaaggccgtggtgacgcgcgtcgagccttcgctggaagcctgcttcgtggattac
ggcgaagaccgccaaggctttttgccgttcaaggaaatcgggcgccaatacttccaaggc
aatgcctcgcccgcccaggcgcgcatccaggacgtgatcaaagaaggccaggaactgctg
gttcaaatcgaaaaagaagagcgcggcaacaaaggcgcggccctcaccaccttcgtcagc
ttggccgggcgctacgtggtgctgatgcccaacaacccgcgcggcggtggcgtgagccgg
cgcatcgaaggcgacgaacgggccgaactcaaagcggtgctggaccagctcgactacccg
ggtggcatgagcatcatcgcgcgcaccgccggcatagggcgcgaagcgggtgaattgcaa
tgggacttgaactacctgctcaagctctggaacgccatcgacggcgccgccaaagccggc
aagggcgcgttcctgatttaccaggaatcgagcctggtgatccgcgccatccgcgactat
ttcaacagccagatcggtgaaatcctgatcgacaccgacgacatctacgagcaagcgcac
cagttcatgagccacgtgatgcccgaacatgggcatcgggtgaagcgctaccgcgacgac
gcgccgctgttttcgcgcttccagatcgagcaccagatcgaaaccgcttacagccgcacg
gtgcaactgcccagcggcggcgcgatcgtgatcgaccagaccgaagcgctggtggcggtg
gacgtgaactcggcgcgctccatcaagggcggcgacatcgaggaaaccgcgttgcgcacc
aacctcgaggccgccgacgaagtggcgcgccaagcccggctgcgcgatttgggcggcctg
ctggtgatcgacttcatcgacatggaagaatcgcgcaaccggcgcgatgtagaaaaccgc
ctgcgcgatgcgctgcgccaagaccgcgcccgggtgcagttcagcgccatcagcaaattt
ggcctgctcgaaatgagccgccagcgcctgcgccccaccttggccgaaggggcctccatc
ccctgcccgcgctgcggcggctcgggccacatccgcgacaccgagagctcggcgctgcaa
attttgcgcgtgatccaagaagaatcgctcaaagacggcaccgccgccgtgttcgtgcag
gtgccggttgaagtggcaagctttttgctcaacgaaaaacgcaccgagatcaccaagatc
gagctgcgccagcgcatcaacgtgctgctggtgcccaacaaatcgctcgacaccccacac
tacaagctcgaacgcctcaagcacgacgacccgcgcctcgacaagctcgacgccagctac
cggctggccgaagaaatcgacgacgtggccaccgtgacccggcgcagccacgagcgcgcc
aacaagcaagagccgctgatcaagggcgtgctgcccgacggcccggccccgcaagtggcg
gccaaggccagcccaggcgctggcgcaaccggtgcggctgcggtggtgcctcaggcaccc
actgcgacaccaaccaccgcagccagcgcgggcgcagctgcgcacggcgtgccggccgcc
gcctcgagcggcttcatggcgtggttcaagcgcttgctgggcttggcaccggcacccgag
gctgcgcctgcagcagcaccggctgccaggcgcgccgcaacggccggccctgctgccacc
aaggccgagtcgccacgcggtccacgcggcggcagcggccgcggtcgtggcggagaacgc
ggtgaacgcagcgagcgcggggagcgtgttgaacgcagcaaccgcgccgaaggcgctgcc
gaagccggtgcacgcacgggcgaaggccgccgcggcgagcgcaccgagcgccccagccgc
aacgaagggcgtaccgaaggccgcatcgagggcacaacagaaggccgcgccgagcgcggt
ggcgcgcgcaccgaagccggtgagcggcccgagcgcagcgaaacccgccgccccaaccgc
tcggagcgcggcgaacgcggcgagcggcccgagcgcgagggacgccctgaaaataccagc
accgaagcccagctgcccagcgccaccggcgaggccgacggccaagccagcgccagcgca
cccgccgataacgtgcggcgcgagcgcagccggggcggacgcggcgagggccggcgcagc
gccgccgcggccgacaccagcgcagccgtggcggacccaaccgacgccgacaccagcgcc
cagccggccttggccgatggcgctgtagccccagaaaacggctccagccagccagcgggc
gaacgcgagaacgaaggcacgggcgggcgccgccgcagccgcgaccgcttcggccgcgac
cggcgcgaacgcgccagcaccaccgaaggcaccgagggcagcgacggcaccgagaccagc
gaaggtggcacggggtacgccacgccccttgcaacggccgccgcagccaccgccagcaac
gcagctgctgaacccagcgagcaagaggatgccaccccggcacgctcgtacttcagccga
gccagcagccagcccgcgcccgccgcgcccacctcaagccccactgccgcttccaacgca
acggcaaaggctgatgcagcgaccgctcagcagaccgatgcagcaaggagccaaagccaa
gtaccgaccccgacagcggccaccgcacctgcagcaccagccccggcaccagctccggct
cctgccgcagccagcgcgcccttcgtgctgccactgcccgagctcgaggcgctggccgtc
caagccggtctgcaatgggtgcagtccgacccggcccgcatcgagcaggcccgcgccgcc
agcgccgctctggtgccgacgccgcagctgccgcgccagcccaaaccggtgcaactgccc
gacgacggcccgctggtgctggtcgaaacccgccgcgacctgcgccaactggtgctgcca
cacgaagggtga
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